[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15803.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15803	7919856	NM_181746	LASS2		LAG1 homolog, ceramide synthase 2

Fetching correlation data, please wait...
Getting list of correlations for id 15803.
Getting list of p-values for id 15803.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.101 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919856	8099340	NM_017491	WDR1	0.847714	4.011556e-30	6.950823e-26	6.950823e-26
2	7919856	8077550	NM_001077525	MTMR14	0.846510	5.826907e-30	1.009628e-25	5.048141e-26
3	7919856	7913169	NM_004930	CAPZB	0.834007	2.350871e-28	4.073354e-24	1.357785e-24
4	7919856	8160914	NM_007126	VCP	0.829010	9.466957e-28	1.640340e-23	4.100849e-24
5	7919856	7911619	NM_002074	GNB1	0.819285	1.256296e-26	2.176784e-22	4.353569e-23
6	7919856	7997168	NM_014761	KIAA0174	0.813440	5.522515e-26	9.568862e-22	1.594810e-22
7	7919856	8045247	NM_017958	PLEKHB2	0.812286	7.352659e-26	1.273995e-21	1.819993e-22
8	7919856	7940051	NM_015457	ZDHHC5	0.807485	2.368116e-25	4.103234e-21	5.129043e-22
9	7919856	7987172	NM_020154	C15orf24	0.807168	2.555145e-25	4.427300e-21	4.919223e-22
10	7919856	7947894	NM_198700	CELF1	0.807132	2.577457e-25	4.465959e-21	4.465959e-22
11	7919856	8082478	NM_016128	COPG	0.802640	7.462575e-25	1.293040e-20	1.175491e-21
12	7919856	7915504	NM_022821	ELOVL1	0.801379	1.000707e-24	1.733925e-20	1.444938e-21
13	7919856	7978208	NM_012461	TINF2	0.800757	1.155635e-24	2.002368e-20	1.540283e-21
14	7919856	8077652	NM_005718	ARPC4	0.799413	1.574903e-24	2.728834e-20	1.949167e-21
15	7919856	8050908	NM_000182	HADHA	0.796172	3.289504e-24	5.699724e-20	3.799816e-21
16	7919856	8166805	NM_005765	ATP6AP2	0.793404	6.106729e-24	1.058113e-19	6.613206e-21
17	7919856	7906703	NM_004550	NDUFS2	0.789759	1.359487e-23	2.355582e-19	1.385637e-20
18	7919856	8018364	NM_002086	GRB2	0.789065	1.580328e-23	2.738235e-19	1.521242e-20
19	7919856	8161056	NM_006289	TLN1	0.787673	2.134296e-23	3.698095e-19	1.946366e-20
20	7919856	7956593	NM_006812	OS9	0.785710	3.247407e-23	5.626782e-19	2.813391e-20
21	7919856	8066716	NM_133171	ELMO2	0.785502	3.394315e-23	5.881330e-19	2.800633e-20
22	7919856	7912198	NM_001428	ENO1	0.784660	4.057408e-23	7.030271e-19	3.195578e-20
23	7919856	8163784	NM_012164	FBXW2	0.784001	4.663906e-23	8.081150e-19	3.513544e-20
24	7919856	7941583	NM_030981	RAB1B	0.782179	6.834636e-23	1.184237e-18	4.934323e-20
25	7919856	8070819	NM_004339	PTTG1IP	0.781991	7.108481e-23	1.231686e-18	4.926746e-20
26	7919856	8133434	NM_022170	EIF4H	0.780680	9.333444e-23	1.617206e-18	6.220022e-20
27	7919856	8136869	NM_032982	CASP2	0.780474	9.741884e-23	1.687976e-18	6.251764e-20
28	7919856	7952557	NM_003139	SRPR	0.779532	1.183151e-22	2.050046e-18	7.321591e-20
29	7919856	8087409	NM_001664	RHOA	0.778612	1.429235e-22	2.476435e-18	8.539432e-20
30	7919856	7930162	NM_017787	C10orf26	0.777482	1.800532e-22	3.119781e-18	1.039927e-19
31	7919856	7921752	NM_001025598	ARHGAP30	0.777322	1.860007e-22	3.222835e-18	1.039624e-19
32	7919856	7900833	NM_014663	KDM4A	0.775671	2.599449e-22	4.504066e-18	1.407521e-19
33	7919856	8061186	NM_006363	SEC23B	0.775415	2.736804e-22	4.742060e-18	1.436988e-19
34	7919856	8071434	NM_005207	CRKL	0.773998	3.638173e-22	6.303863e-18	1.854077e-19
35	7919856	7948744	NM_198335	GANAB	0.772651	4.759214e-22	8.246290e-18	2.356083e-19
36	7919856	8006690	NM_012138	AATF	0.772527	4.878177e-22	8.452418e-18	2.347894e-19
37	7919856	8138773	NM_022170	EIF4H	0.772286	5.116589e-22	8.865514e-18	2.396085e-19
38	7919856	8108330	NM_016604	KDM3B	0.771708	5.737267e-22	9.940962e-18	2.616043e-19
39	7919856	8063369	NM_018683	RNF114	0.771631	5.824900e-22	1.009280e-17	2.587898e-19
40	7919856	7960594	NM_001273	CHD4	0.771115	6.449691e-22	1.117538e-17	2.793845e-19
41	7919856	7990211	NM_000520	HEXA	0.769423	8.991606e-22	1.557976e-17	3.799941e-19
42	7919856	8164883	NM_033161	SURF4	0.768486	1.079436e-21	1.870339e-17	4.453189e-19
43	7919856	8038515	NM_016440	VRK3	0.767412	1.329726e-21	2.304017e-17	5.358179e-19
44	7919856	8119609	NM_006586	CNPY3	0.765683	1.855328e-21	3.214727e-17	7.306198e-19
45	7919856	8048847	NM_001135187	AGFG1	0.765541	1.906541e-21	3.303463e-17	7.341029e-19
46	7919856	8089911	NM_005335	HCLS1	0.764771	2.209559e-21	3.828502e-17	8.322831e-19
47	7919856	8045090	NM_020120	UGGT1	0.764145	2.489789e-21	4.314057e-17	9.178845e-19
48	7919856	8082431	NM_004637	RAB7A	0.763347	2.897192e-21	5.019964e-17	1.045826e-18
49	7919856	7982531	NM_006305	ANP32A	0.762935	3.132709e-21	5.428045e-17	1.107764e-18
50	7919856	7989696	NM_001127889	SPG21	0.760843	4.645047e-21	8.048473e-17	1.609695e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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