[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12987	8066716	NM_133171	ELMO2		engulfment and cell motility 2

Fetching correlation data, please wait...
Getting list of correlations for id 12987.
Getting list of p-values for id 12987.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8066716	8068974	NM_003274	TRAPPC10	0.852367	9.185969e-31	1.591653e-26	1.591653e-26
2	8066716	7925851	NM_014023	WDR37	0.851139	1.362122e-30	2.360149e-26	1.180074e-26
3	8066716	7952557	NM_003139	SRPR	0.837144	9.575262e-29	1.659106e-24	5.530352e-25
4	8066716	8006392	NM_002815	PSMD11	0.817160	2.165523e-26	3.752201e-22	9.380502e-23
5	8066716	8160914	NM_007126	VCP	0.815100	3.645916e-26	6.317279e-22	1.263456e-22
6	8066716	7913169	NM_004930	CAPZB	0.809986	1.292794e-25	2.240025e-21	3.733375e-22
7	8066716	8099340	NM_017491	WDR1	0.809931	1.310473e-25	2.270656e-21	3.243794e-22
8	8066716	8013696	NM_014680	KIAA0100	0.807823	2.183469e-25	3.783297e-21	4.729121e-22
9	8066716	8082478	NM_016128	COPG	0.806909	2.718778e-25	4.710826e-21	5.234251e-22
10	8066716	8009164	NM_005828	DCAF7	0.806604	2.924743e-25	5.067703e-21	5.067703e-22
11	8066716	8022996	NM_020964	KIAA1632	0.805937	3.429610e-25	5.942486e-21	5.402260e-22
12	8066716	7999233	NM_032569	GLYR1	0.805549	3.761133e-25	6.516915e-21	5.430763e-22
13	8066716	8163784	NM_012164	FBXW2	0.804473	4.851947e-25	8.406968e-21	6.466898e-22
14	8066716	7941511	NM_006842	SF3B2	0.803785	5.705878e-25	9.886575e-21	7.061839e-22
15	8066716	7928369	NM_004922	SEC24C	0.799817	1.435159e-24	2.486699e-20	1.657799e-21
16	8066716	7905700	NM_014847	UBAP2L	0.799745	1.459186e-24	2.528331e-20	1.580207e-21
17	8066716	8076465	NM_032311	POLDIP3	0.799221	1.645608e-24	2.851345e-20	1.677262e-21
18	8066716	7990211	NM_000520	HEXA	0.798071	2.139788e-24	3.707611e-20	2.059784e-21
19	8066716	8123609	NM_004155	SERPINB9	0.797087	2.675641e-24	4.636084e-20	2.440044e-21
20	8066716	7990657	NM_144572	TBC1D2B	0.796774	2.871825e-24	4.976010e-20	2.488005e-21
21	8066716	7993680	BC050464	C16orf62	0.795614	3.729461e-24	6.462037e-20	3.077160e-21
22	8066716	8061186	NM_006363	SEC23B	0.793838	5.545004e-24	9.607828e-20	4.367195e-21
23	8066716	7990487	NM_015477	SIN3A	0.792013	8.303869e-24	1.438811e-19	6.255702e-21
24	8066716	8005903	NM_003170	SUPT6H	0.789438	1.457620e-23	2.525619e-19	1.052341e-20
25	8066716	8006850	NM_016507	CDK12	0.789395	1.471424e-23	2.549536e-19	1.019815e-20
26	8066716	7953351	NM_014865	NCAPD2	0.789198	1.535606e-23	2.660745e-19	1.023363e-20
27	8066716	8164177	NM_001006617	MAPKAP1	0.788842	1.658575e-23	2.873813e-19	1.064375e-20
28	8066716	8132819	NM_006060	IKZF1	0.788765	1.686620e-23	2.922406e-19	1.043716e-20
29	8066716	8077550	NM_001077525	MTMR14	0.788390	1.828847e-23	3.168843e-19	1.092704e-20
30	8066716	7944285	NM_001655	ARCN1	0.788072	1.958529e-23	3.393544e-19	1.131181e-20
31	8066716	8110803	NM_030782	CLPTM1L	0.786864	2.538532e-23	4.398514e-19	1.418876e-20
32	8066716	7919856	NM_181746	LASS2	0.785502	3.394315e-23	5.881330e-19	1.837915e-20
33	8066716	7948814	NM_001079559	HNRNPUL2	0.785273	3.563081e-23	6.173751e-19	1.870834e-20
34	8066716	8093685	NM_002111	HTT	0.784258	4.417019e-23	7.653369e-19	2.250991e-20
35	8066716	8053909	NM_014014	SNRNP200	0.784159	4.510334e-23	7.815056e-19	2.232873e-20
36	8066716	7976876	NM_001376	DYNC1H1	0.783600	5.073883e-23	8.791517e-19	2.442088e-20
37	8066716	7948744	NM_198335	GANAB	0.780593	9.504114e-23	1.646778e-18	4.450751e-20
38	8066716	8115783	NM_005990	STK10	0.779740	1.133595e-22	1.964181e-18	5.168896e-20
39	8066716	7931728	NM_015155	LARP4B	0.779674	1.148989e-22	1.990853e-18	5.104751e-20
40	8066716	7920810	NM_001037533	GON4L	0.777041	1.969677e-22	3.412859e-18	8.532147e-20
41	8066716	7900833	NM_014663	KDM4A	0.776884	2.033424e-22	3.523313e-18	8.593447e-20
42	8066716	7978208	NM_012461	TINF2	0.776220	2.326201e-22	4.030609e-18	9.596688e-20
43	8066716	7955908	NM_005337	NCKAP1L	0.775723	2.572281e-22	4.456991e-18	1.036509e-19
44	8066716	7945132	NM_002017	FLI1	0.775696	2.586203e-22	4.481114e-18	1.018435e-19
45	8066716	8133434	NM_022170	EIF4H	0.774506	3.285890e-22	5.693461e-18	1.265214e-19
46	8066716	7924526	NM_005426	TP53BP2	0.774062	3.591594e-22	6.223156e-18	1.352860e-19
47	8066716	8108330	NM_016604	KDM3B	0.773459	4.051798e-22	7.020550e-18	1.493734e-19
48	8066716	7997168	NM_014761	KIAA0174	0.773017	4.424519e-22	7.666363e-18	1.597159e-19
49	8066716	7930498	NM_016234	ACSL5	0.771240	6.293237e-22	1.090429e-17	2.225366e-19
50	8066716	7947894	NM_198700	CELF1	0.770798	6.866047e-22	1.189680e-17	2.379360e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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