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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
17206 7904974 NR_003242 C1orf152 link to infopage profilin 1 pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 17206.
Getting list of p-values for id 17206.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.275 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7904974 8011759 NM_005022 PFN1 link to infopage 0.889194 9.283737e-37 1.608593e-32 1.608593e-32
2 7904974 8164644 NM_033387 FAM78A link to infopage 0.824068 3.593247e-27 6.226019e-23 3.113010e-23
3 7904974 8019250 NM_000918 P4HB link to infopage 0.822365 5.635311e-27 9.764303e-23 3.254768e-23
4 7904974 8176282 NM_001029891 PGAM4 link to infopage 0.822269 5.778546e-27 1.001249e-22 2.503122e-23
5 7904974 8173729 NM_001029891 PGAM4 link to infopage 0.822269 5.778546e-27 1.001249e-22 2.002497e-23
6 7904974 7948192 NM_003146 SSRP1 link to infopage 0.821989 6.219596e-27 1.077669e-22 1.796116e-23
7 7904974 7948696 NM_004739 MTA2 link to infopage 0.820564 9.021328e-27 1.563126e-22 2.233036e-23
8 7904974 7965480 NM_002629 PGAM1 link to infopage 0.820559 9.033565e-27 1.565246e-22 1.956557e-23
9 7904974 8110803 NM_030782 CLPTM1L link to infopage 0.815681 3.149738e-26 5.457551e-22 6.063946e-23
10 7904974 7958152 NM_002629 PGAM1 link to infopage 0.812694 6.646520e-26 1.151643e-21 1.151643e-22
11 7904974 7929624 NM_002629 PGAM1 link to infopage 0.808483 1.861895e-25 3.226106e-21 2.932823e-22
12 7904974 8084439 NM_182917 EIF4G1 link to infopage 0.794557 4.725061e-24 8.187113e-20 6.822594e-21
13 7904974 8004030 NM_015528 RNF167 link to infopage 0.790591 1.133957e-23 1.964808e-19 1.511391e-20
14 7904974 8139433 NM_033054 MYO1G link to infopage 0.783967 4.697172e-23 8.138790e-19 5.813421e-20
15 7904974 7913256 NM_005216 DDOST link to infopage 0.777037 1.971125e-22 3.415369e-18 2.276913e-19
16 7904974 8026106 NM_004343 CALR link to infopage 0.775645 2.613079e-22 4.527683e-18 2.829802e-19
17 7904974 7990151 NM_182470 PKM2 link to infopage 0.775249 2.830252e-22 4.903977e-18 2.884692e-19
18 7904974 8027621 NM_000175 GPI link to infopage 0.773301 4.181326e-22 7.244983e-18 4.024990e-19
19 7904974 7920515 NM_017582 UBE2Q1 link to infopage 0.772218 5.186393e-22 8.986463e-18 4.729717e-19
20 7904974 7949496 NM_005507 CFL1 link to infopage 0.770672 7.038610e-22 1.219580e-17 6.097900e-19
21 7904974 8013696 NM_014680 KIAA0100 link to infopage 0.767535 1.298482e-21 2.249879e-17 1.071371e-18
22 7904974 8119627 NM_006245 PPP2R5D link to infopage 0.767061 1.423092e-21 2.465791e-17 1.120814e-18
23 7904974 8037005 NM_000660 TGFB1 link to infopage 0.764947 2.136365e-21 3.701680e-17 1.609426e-18
24 7904974 8019263 NM_004309 ARHGDIA link to infopage 0.764484 2.334049e-21 4.044207e-17 1.685086e-18
25 7904974 7949264 NM_006795 EHD1 link to infopage 0.761817 3.868459e-21 6.702879e-17 2.681152e-18
26 7904974 8026548 NM_001130524 AP1M1 link to infopage 0.760705 4.767060e-21 8.259885e-17 3.176879e-18
27 7904974 8099340 NM_017491 WDR1 link to infopage 0.760083 5.354529e-21 9.277792e-17 3.436219e-18
28 7904974 8019762 link to infopage 0.756842 9.760064e-21 1.691126e-16 6.039737e-18
29 7904974 8013486 NM_015276 USP22 link to infopage 0.756778 9.875407e-21 1.711112e-16 5.900385e-18
30 7904974 7984871 NM_004383 CSK link to infopage 0.754908 1.390123e-20 2.408666e-16 8.028886e-18
31 7904974 8176026 NM_001456 FLNA link to infopage 0.754460 1.508043e-20 2.612985e-16 8.428985e-18
32 7904974 7978208 NM_012461 TINF2 link to infopage 0.750036 3.340484e-20 5.788056e-16 1.808768e-17
33 7904974 8007715 NM_021079 NMT1 link to infopage 0.749987 3.370110e-20 5.839390e-16 1.769512e-17
34 7904974 7948744 NM_198335 GANAB link to infopage 0.749821 3.470959e-20 6.014130e-16 1.768862e-17
35 7904974 7970287 NM_005561 LAMP1 link to infopage 0.747155 5.557545e-20 9.629558e-16 2.751302e-17
36 7904974 7996919 NM_013245 VPS4A link to infopage 0.746212 6.556250e-20 1.136001e-15 3.155560e-17
37 7904974 7937802 NM_004356 CD81 link to infopage 0.746085 6.702610e-20 1.161361e-15 3.138814e-17
38 7904974 7941797 NM_001619 ADRBK1 link to infopage 0.745768 7.083669e-20 1.227387e-15 3.229967e-17
39 7904974 8132592 NM_002541 OGDH link to infopage 0.745242 7.763852e-20 1.345243e-15 3.449340e-17
40 7904974 8119648 NM_057161 KLHDC3 link to infopage 0.743693 1.015432e-19 1.759439e-15 4.398598e-17
41 7904974 8019765 NM_004309 ARHGDIA link to infopage 0.740986 1.615982e-19 2.800012e-15 6.829296e-17
42 7904974 8024019 NM_002819 PTBP1 link to infopage 0.740964 1.621979e-19 2.810404e-15 6.691437e-17
43 7904974 7947681 NM_004308 ARHGAP1 link to infopage 0.740861 1.650708e-19 2.860182e-15 6.651587e-17
44 7904974 8075924 NM_002405 MFNG link to infopage 0.740727 1.688989e-19 2.926511e-15 6.651160e-17
45 7904974 7972946 NM_007368 RASA3 link to infopage 0.739754 1.992602e-19 3.452581e-15 7.672403e-17
46 7904974 7952557 NM_003139 SRPR link to infopage 0.737700 2.818250e-19 4.883182e-15 1.061561e-16
47 7904974 8012257 NM_000546 TP53 link to infopage 0.737517 2.906180e-19 5.035539e-15 1.071391e-16
48 7904974 7998033 NM_014972 TCF25 link to infopage 0.737483 2.922784e-19 5.064307e-15 1.055064e-16
49 7904974 8179504 NM_005104 BRD2 link to infopage 0.737190 3.070084e-19 5.319534e-15 1.085619e-16
50 7904974 7904969 NM_030796 VOPP1 link to infopage 0.736293 3.567509e-19 6.181422e-15 1.236284e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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