Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15741	8118580	NM_005104	BRD2		bromodomain containing 2
15790	8179504	NM_005104	BRD2		bromodomain containing 2

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118580	8179504	NM_005104	BRD2		0.994483	1.081299e-102	3.747134e-98	3.747134e-98
2	8179504	8118580	NM_005104	BRD2		0.994483	1.081299e-102	3.747134e-98	1.873567e-98
3	8118580	8158783	NM_005085	NUP214		0.857853	1.512133e-31	5.240144e-27	1.746715e-27
4	8179504	8158783	NM_005085	NUP214		0.854302	4.903696e-31	1.699327e-26	4.248317e-27
5	8179504	8172914	NM_031407	HUWE1		0.839538	4.762777e-29	1.650493e-24	3.300985e-25
6	8179504	8164607	NM_015033	FNBP1		0.828404	1.117318e-27	3.871954e-23	6.453256e-24
7	8179504	7976876	NM_001376	DYNC1H1		0.828273	1.158151e-27	4.013456e-23	5.733508e-24
8	8118580	7920000	NM_015100	POGZ		0.827902	1.281236e-27	4.439996e-23	5.549995e-24
9	8118580	8172914	NM_031407	HUWE1		0.827859	1.296207e-27	4.491875e-23	4.990972e-24
10	8179504	8053909	NM_014014	SNRNP200		0.827225	1.540147e-27	5.337226e-23	5.337226e-24
11	8179504	8005903	NM_003170	SUPT6H		0.821457	7.148127e-27	2.477112e-22	2.251920e-23
12	8179504	7916747	NM_002227	JAK1		0.820454	9.284007e-27	3.217280e-22	2.681067e-23
13	8179504	8172876	NM_006306	SMC1A		0.820405	9.403331e-27	3.258630e-22	2.506639e-23
14	8118580	8053909	NM_014014	SNRNP200		0.819118	1.311529e-26	4.544973e-22	3.246409e-23
15	8179504	7907310	NM_015172	BAT2L2		0.818084	1.710638e-26	5.928046e-22	3.952031e-23
16	8118580	7976876	NM_001376	DYNC1H1		0.817055	2.223939e-26	7.706838e-22	4.816774e-23
17	8118580	8164607	NM_015033	FNBP1		0.817039	2.233296e-26	7.739265e-22	4.552509e-23
18	8179504	7952557	NM_003139	SRPR		0.816980	2.266935e-26	7.855835e-22	4.364353e-23
19	8118580	7907310	NM_015172	BAT2L2		0.816671	2.452044e-26	8.497312e-22	4.472269e-23
20	8179504	7920000	NM_015100	POGZ		0.816148	2.799073e-26	9.699908e-22	4.849954e-23
21	8179504	7913001	NM_020765	UBR4		0.814886	3.847457e-26	1.333298e-21	6.349038e-23
22	8118580	8172876	NM_006306	SMC1A		0.812577	6.841378e-26	2.370811e-21	1.077641e-22
23	8179504	8002729	NR_027264	GLG1		0.812435	7.085601e-26	2.455444e-21	1.067584e-22
24	8179504	8158829	NM_013318	BAT2L1		0.811407	9.130473e-26	3.164074e-21	1.318364e-22
25	8179504	8110289	NM_022455	NSD1		0.811153	9.717581e-26	3.367531e-21	1.347012e-22
26	8118580	7913001	NM_020765	UBR4		0.810099	1.257709e-25	4.358465e-21	1.676333e-22
27	8118580	7916747	NM_002227	JAK1		0.809989	1.292087e-25	4.477597e-21	1.658369e-22
28	8179504	8132819	NM_006060	IKZF1		0.807962	2.111356e-25	7.316692e-21	2.613104e-22
29	8118580	8110289	NM_022455	NSD1		0.806990	2.666521e-25	9.240561e-21	3.186400e-22
30	8118580	8069910	NM_020706	SFRS15		0.805026	4.256838e-25	1.475165e-20	4.917215e-22
31	8118580	8005903	NM_003170	SUPT6H		0.804790	4.501678e-25	1.560012e-20	5.032296e-22
32	8179504	8025697	NM_012218	ILF3		0.804025	5.392218e-25	1.868619e-20	5.839435e-22
33	8179504	8068974	NM_003274	TRAPPC10		0.803627	5.921978e-25	2.052202e-20	6.218795e-22
34	8179504	7977693	NM_020920	CHD8		0.802929	6.975094e-25	2.417149e-20	7.109262e-22
35	8179504	8069910	NM_020706	SFRS15		0.801216	1.039309e-24	3.601621e-20	1.029035e-21
36	8118580	8158829	NM_013318	BAT2L1		0.801200	1.043083e-24	3.614700e-20	1.004083e-21
37	8179504	7905700	NM_014847	UBAP2L		0.799394	1.581616e-24	5.480933e-20	1.481333e-21
38	8179504	8078091	NM_003298	NR2C2		0.799131	1.679871e-24	5.821426e-20	1.531954e-21
39	8118580	7952557	NM_003139	SRPR		0.798897	1.772378e-24	6.141998e-20	1.574871e-21
40	8118580	8002729	NR_027264	GLG1		0.797866	2.242212e-24	7.770160e-20	1.942540e-21
41	8118580	8025697	NM_012218	ILF3		0.796873	2.807867e-24	9.730384e-20	2.373264e-21
42	8118580	8132819	NM_006060	IKZF1		0.796552	3.019267e-24	1.046297e-19	2.491183e-21
43	8118580	7977693	NM_020920	CHD8		0.795747	3.619313e-24	1.254237e-19	2.916830e-21
44	8179504	8006850	NM_016507	CDK12		0.795423	3.892506e-24	1.348909e-19	3.065702e-21
45	8118580	8078091	NM_003298	NR2C2		0.794738	4.537362e-24	1.572377e-19	3.494172e-21
46	8118580	8074647	NM_058004	PI4KA		0.794669	4.608279e-24	1.596953e-19	3.471637e-21
47	8118580	7905700	NM_014847	UBAP2L		0.794331	4.968435e-24	1.721761e-19	3.663322e-21
48	8118580	7993349	NM_006985	NPIP		0.792837	6.923555e-24	2.399289e-19	4.998518e-21
49	8179504	8074647	NM_058004	PI4KA		0.792339	7.728609e-24	2.678272e-19	5.465861e-21
50	8179504	8070988	NM_003906	MCM3AP		0.791549	9.194625e-24	3.186305e-19	6.372611e-21

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.