[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13522	8007715	NM_021079	NMT1		N-myristoyltransferase 1

Fetching correlation data, please wait...
Getting list of correlations for id 13522.
Getting list of p-values for id 13522.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8007715	7913256	NM_005216	DDOST	0.840541	3.542519e-29	6.138122e-25	6.138122e-25
2	8007715	7948696	NM_004739	MTA2	0.818627	1.488139e-26	2.578499e-22	1.289249e-22
3	8007715	8119648	NM_057161	KLHDC3	0.818261	1.634814e-26	2.832642e-22	9.442140e-23
4	8007715	8110803	NM_030782	CLPTM1L	0.816594	2.500071e-26	4.331873e-22	1.082968e-22
5	8007715	8016099	NM_004247	EFTUD2	0.813872	4.958970e-26	8.592407e-22	1.718481e-22
6	8007715	8006392	NM_002815	PSMD11	0.813428	5.538478e-26	9.596521e-22	1.599420e-22
7	8007715	7914563	NM_003680	YARS	0.810423	1.162223e-25	2.013785e-21	2.876835e-22
8	8007715	8143781	NM_024711	GIMAP6	0.804372	4.969577e-25	8.610786e-21	1.076348e-21
9	8007715	8130505	NM_003379	EZR	0.804082	5.321027e-25	9.219744e-21	1.024416e-21
10	8007715	8018600	NM_014230	SRP68	0.802535	7.647310e-25	1.325049e-20	1.325049e-21
11	8007715	8073645	NM_015380	SAMM50	0.796835	2.832442e-24	4.907773e-20	4.461612e-21
12	8007715	8064522	NM_174856	IDH3B	0.795792	3.582688e-24	6.207724e-20	5.173103e-21
13	8007715	7948744	NM_198335	GANAB	0.795041	4.239987e-24	7.346626e-20	5.651250e-21
14	8007715	8062349	NM_002951	RPN2	0.786799	2.574143e-23	4.460218e-19	3.185870e-20
15	8007715	7978208	NM_012461	TINF2	0.786702	2.628234e-23	4.553941e-19	3.035960e-20
16	8007715	8175052	NM_001130847	AIFM1	0.785982	3.064952e-23	5.310643e-19	3.319152e-20
17	8007715	8104166	NM_004168	SDHA	0.783737	4.930267e-23	8.542673e-19	5.025102e-20
18	8007715	8028514	NM_013234	EIF3K	0.783466	5.219598e-23	9.043997e-19	5.024443e-20
19	8007715	7941511	NM_006842	SF3B2	0.782936	5.833711e-23	1.010807e-18	5.320038e-20
20	8007715	8030881	NM_014225	PPP2R1A	0.780875	8.964961e-23	1.553359e-18	7.766794e-20
21	8007715	8040908	NM_014748	SNX17	0.779120	1.287766e-22	2.231313e-18	1.062530e-19
22	8007715	7897753	NM_005957	MTHFR	-0.777058	1.962836e-22	3.401007e-18	1.545912e-19
23	8007715	8013696	NM_014680	KIAA0100	0.776975	1.996161e-22	3.458749e-18	1.503804e-19
24	8007715	8133434	NM_022170	EIF4H	0.776865	2.041399e-22	3.537132e-18	1.473805e-19
25	8007715	8114396	NM_004661	CDC23	0.776622	2.144244e-22	3.715331e-18	1.486133e-19
26	8007715	7990211	NM_000520	HEXA	0.775651	2.609708e-22	4.521841e-18	1.739170e-19
27	8007715	7941709	NM_002896	RBM4	0.772540	4.865205e-22	8.429941e-18	3.122200e-19
28	8007715	7941214	NM_002689	POLA2	0.771337	6.174282e-22	1.069818e-17	3.820778e-19
29	8007715	8164644	NM_033387	FAM78A	0.771225	6.312191e-22	1.093713e-17	3.771425e-19
30	8007715	8004497	NM_001416	EIF4A1	0.770569	7.182515e-22	1.244514e-17	4.148381e-19
31	8007715	7903619	NM_006513	SARS	0.769581	8.719097e-22	1.510758e-17	4.873413e-19
32	8007715	8012257	NM_000546	TP53	0.769155	9.474849e-22	1.641707e-17	5.130335e-19
33	8007715	7948192	NM_003146	SSRP1	0.769007	9.752447e-22	1.689807e-17	5.120626e-19
34	8007715	7981032	NM_020414	DDX24	0.766880	1.473538e-21	2.553199e-17	7.509408e-19
35	8007715	7952557	NM_003139	SRPR	0.765578	1.893189e-21	3.280329e-17	9.372369e-19
36	8007715	8027621	NM_000175	GPI	0.764701	2.238994e-21	3.879505e-17	1.077640e-18
37	8007715	8139433	NM_033054	MYO1G	0.764372	2.384367e-21	4.131392e-17	1.116592e-18
38	8007715	7948997	NM_015459	ATL3	0.764202	2.462700e-21	4.267121e-17	1.122927e-18
39	8007715	8030007	NM_001425	EMP3	0.763602	2.760314e-21	4.782796e-17	1.226358e-18
40	8007715	7962869	NM_004818	DDX23	0.761092	4.433208e-21	7.681419e-17	1.920355e-18
41	8007715	8158112	NM_001261	CDK9	0.761080	4.443576e-21	7.699385e-17	1.877899e-18
42	8007715	8026106	NM_004343	CALR	0.760716	4.757159e-21	8.242730e-17	1.962555e-18
43	8007715	8109368	NM_005754	G3BP1	0.760245	5.195104e-21	9.001556e-17	2.093385e-18
44	8007715	8002919	NM_001130089	KARS	0.757674	8.373878e-21	1.450942e-16	3.297595e-18
45	8007715	8032730	NM_001961	EEF2	0.757236	9.077599e-21	1.572876e-16	3.495279e-18
46	8007715	8134699	NM_006833	COPS6	0.755757	1.190616e-20	2.062980e-16	4.484738e-18
47	8007715	8138773	NM_022170	EIF4H	0.755450	1.259401e-20	2.182165e-16	4.642903e-18
48	8007715	7912198	NM_001428	ENO1	0.754859	1.402520e-20	2.430146e-16	5.062804e-18
49	8007715	8062174	NM_198398	ERGIC3	0.754832	1.409515e-20	2.442266e-16	4.984216e-18
50	8007715	8079662	NM_006321	ARIH2	0.754332	1.543550e-20	2.674510e-16	5.349020e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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