[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17042	8032730	NM_001961	EEF2		eukaryotic translation elongation factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 17042.
Getting list of p-values for id 17042.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8032730	7948192	NM_003146	SSRP1	0.853190	7.042774e-31	1.220301e-26	1.220301e-26
2	8032730	7904254	NM_000701	ATP1A1	0.825105	2.725377e-27	4.722260e-23	2.361130e-23
3	8032730	7981032	NM_020414	DDX24	0.820779	8.531166e-27	1.478195e-22	4.927317e-23
4	8032730	8109368	NM_005754	G3BP1	0.820009	1.041852e-26	1.805218e-22	4.513044e-23
5	8032730	8032576	NM_198969	AES	0.813860	4.974099e-26	8.618621e-22	1.723724e-22
6	8032730	7948696	NM_004739	MTA2	0.813655	5.234808e-26	9.070352e-22	1.511725e-22
7	8032730	7948744	NM_198335	GANAB	0.807803	2.194106e-25	3.801727e-21	5.431039e-22
8	8032730	8062349	NM_002951	RPN2	0.803588	5.976473e-25	1.035543e-20	1.294429e-21
9	8032730	8076209	NM_000967	RPL3	0.796746	2.889722e-24	5.007022e-20	5.563358e-21
10	8032730	8048120	NM_004044	ATIC	0.793508	5.967201e-24	1.033937e-19	1.033937e-20
11	8032730	8174692	NM_145799	SEPT6	0.792342	7.721820e-24	1.337960e-19	1.216327e-20
12	8032730	8143781	NM_024711	GIMAP6	0.791345	9.616207e-24	1.666200e-19	1.388500e-20
13	8032730	7902874	NM_032270	LRRC8C	0.791342	9.621868e-24	1.667181e-19	1.282447e-20
14	8032730	8147447	NM_014754	PTDSS1	0.790467	1.165218e-23	2.018974e-19	1.442124e-20
15	8032730	8038086	NM_000979	RPL18	0.789604	1.406203e-23	2.436528e-19	1.624352e-20
16	8032730	8049073			0.788502	1.785145e-23	3.093120e-19	1.933200e-20
17	8032730	8072946	NM_016091	EIF3L	0.786832	2.556139e-23	4.429023e-19	2.605308e-20
18	8032730	8130505	NM_003379	EZR	0.786482	2.754674e-23	4.773023e-19	2.651680e-20
19	8032730	8086148	NM_000992	RPL29	0.785654	3.286168e-23	5.693944e-19	2.996813e-20
20	8032730	8110803	NM_030782	CLPTM1L	0.784443	4.248503e-23	7.361381e-19	3.680691e-20
21	8032730	7899753	NM_005356	LCK	0.784021	4.644172e-23	8.046956e-19	3.831884e-20
22	8032730	8036737	NM_001020	RPS16	0.783931	4.732414e-23	8.199854e-19	3.727206e-20
23	8032730	8051075	NM_001521	GTF3C2	0.782389	6.540800e-23	1.133324e-18	4.927497e-20
24	8032730	7913256	NM_005216	DDOST	0.782372	6.564498e-23	1.137431e-18	4.739294e-20
25	8032730	8064351	NM_177559	CSNK2A1	0.781347	8.128496e-23	1.408424e-18	5.633698e-20
26	8032730	8018600	NM_014230	SRP68	0.781157	8.454968e-23	1.464992e-18	5.634586e-20
27	8032730	8042720	NM_006429	CCT7	0.780181	1.035040e-22	1.793414e-18	6.642275e-20
28	8032730	7956166	NM_015292	ESYT1	0.778799	1.375398e-22	2.383153e-18	8.511260e-20
29	8032730	8013348	NM_002952	RPS2	0.775825	2.519749e-22	4.365969e-18	1.505507e-19
30	8032730	7972946	NM_007368	RASA3	0.775332	2.783024e-22	4.822146e-18	1.607382e-19
31	8032730	7997099	NM_012426	SF3B3	0.774839	3.073526e-22	5.325499e-18	1.717903e-19
32	8032730	8031913	NM_005762	TRIM28	0.773279	4.199981e-22	7.277307e-18	2.274158e-19
33	8032730	7903619	NM_006513	SARS	0.773026	4.416895e-22	7.653154e-18	2.319138e-19
34	8032730	7949075	NM_016404	TRMT112	0.773019	4.423274e-22	7.664207e-18	2.254179e-19
35	8032730	8025697	NM_012218	ILF3	0.771976	5.441390e-22	9.428296e-18	2.693799e-19
36	8032730	7915207	NM_001135653	PABPC4	0.771362	6.143974e-22	1.064566e-17	2.957129e-19
37	8032730	8115234	NM_001155	ANXA6	0.769513	8.835072e-22	1.530853e-17	4.137440e-19
38	8032730	8003089	NM_003791	MBTPS1	0.767020	1.434220e-21	2.485073e-17	6.539665e-19
39	8032730	8158714	NM_014285	EXOSC2	0.765438	1.944738e-21	3.369647e-17	8.640120e-19
40	8032730	7986323	NM_015710	GLTSCR2	0.765286	2.002141e-21	3.469111e-17	8.672776e-19
41	8032730	8011141	NM_006445	PRPF8	0.762083	3.679454e-21	6.375390e-17	1.554973e-18
42	8032730	8166184	NM_007220	CA5B	0.761719	3.940690e-21	6.828033e-17	1.625722e-18
43	8032730	7955646	NM_001417	EIF4B	0.760981	4.526787e-21	7.843563e-17	1.824084e-18
44	8032730	7998655	NM_002952	RPS2	0.760911	4.586436e-21	7.946917e-17	1.806118e-18
45	8032730	7944179	NM_000733	CD3E	0.760877	4.615676e-21	7.997582e-17	1.777240e-18
46	8032730	7923917	NM_005449	FAIM3	0.759674	5.778901e-21	1.001310e-16	2.176761e-18
47	8032730	8047641	NM_177538	CYP20A1	0.758747	6.865643e-21	1.189610e-16	2.531085e-18
48	8032730	8087254	NM_000884	IMPDH2	0.757832	8.132252e-21	1.409075e-16	2.935573e-18
49	8032730	8006392	NM_002815	PSMD11	0.757662	8.391262e-21	1.453954e-16	2.967253e-18
50	8032730	8007715	NM_021079	NMT1	0.757236	9.077599e-21	1.572876e-16	3.145751e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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