[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15461	8002133	NM_002801	PSMB10		proteasome (prosome, macropain) subunit, beta type, 10

Fetching correlation data, please wait...
Getting list of correlations for id 15461.
Getting list of p-values for id 15461.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8002133	7973564	NM_176783	PSME1	0.854723	4.272424e-31	7.402828e-27	7.402828e-27
2	8002133	7963911	NM_001780	CD63	0.823116	4.623195e-27	8.010610e-23	4.005305e-23
3	8002133	8134740	NM_001008395	C7orf59	0.820987	8.081762e-27	1.400327e-22	4.667756e-23
4	8002133	8038792	NM_001985	ETFB	0.812533	6.916545e-26	1.198430e-21	2.996074e-22
5	8002133	8169659	NM_004541	NDUFA1	0.811181	9.651453e-26	1.672307e-21	3.344615e-22
6	8002133	7978123	NM_002818	PSME2	0.798092	2.129567e-24	3.689900e-20	6.149833e-21
7	8002133	7920271	NM_019554	S100A4	0.797024	2.713707e-24	4.702040e-20	6.717199e-21
8	8002133	8165309	NM_003792	EDF1	0.793492	5.988031e-24	1.037546e-19	1.296933e-20
9	8002133	7905571	NM_002965	S100A9	0.791193	9.942022e-24	1.722654e-19	1.914060e-20
10	8002133	7994756	NM_002720	PPP4C	0.782735	6.084611e-23	1.054281e-18	1.054281e-19
11	8002133	7930304	NM_004832	GSTO1	0.777549	1.776159e-22	3.077550e-18	2.797773e-19
12	8002133	8043718	NM_001862	COX5B	0.777273	1.878801e-22	3.255399e-18	2.712832e-19
13	8002133	8025500	NM_024292	UBL5	0.772904	4.525231e-22	7.840868e-18	6.031437e-19
14	8002133	8061184	ENST00000398663		0.761586	4.040770e-21	7.001442e-17	5.001030e-18
15	8002133	8116020	NM_006816	LMAN2	0.761466	4.132459e-21	7.160311e-17	4.773541e-18
16	8002133	8028514	NM_013234	EIF3K	0.760736	4.739078e-21	8.211400e-17	5.132125e-18
17	8002133	8003322	NM_000101	CYBA	0.760270	5.170829e-21	8.959495e-17	5.270291e-18
18	8002133	7959078	GENSCAN00000059320		0.753070	1.939603e-20	3.360751e-16	1.867084e-17
19	8002133	7983512	NM_021199	SQRDL	0.752596	2.112867e-20	3.660964e-16	1.926823e-17
20	8002133	8043100	NM_021103	TMSB10	0.751917	2.386986e-20	4.135931e-16	2.067965e-17
21	8002133	7940688	NM_002696	POLR2G	0.751678	2.491845e-20	4.317621e-16	2.056010e-17
22	8002133	7997702	NM_001861	COX4I1	0.751472	2.585241e-20	4.479448e-16	2.036113e-17
23	8002133	8134552	NM_005720	ARPC1B	0.746264	6.495957e-20	1.125554e-15	4.893715e-17
24	8002133	8064502	NM_003091	SNRPB	0.745890	6.934613e-20	1.201560e-15	5.006502e-17
25	8002133	8035304	NM_004335	BST2	0.744682	8.556763e-20	1.482630e-15	5.930521e-17
26	8002133	8039796	NM_014453	CHMP2A	0.743109	1.123137e-19	1.946059e-15	7.484841e-17
27	8002133	8029129	NM_001022	RPS19	0.743104	1.124045e-19	1.947632e-15	7.213453e-17
28	8002133	8074969	NM_001355	DDT	0.735889	3.815675e-19	6.611420e-15	2.361222e-16
29	8002133	8019273	NM_005782	THOC4	0.735471	4.091013e-19	7.088499e-15	2.444310e-16
30	8002133	8134589	NM_003910	BUD31	0.734584	4.740211e-19	8.213363e-15	2.737788e-16
31	8002133	8030374	NM_004107	FCGRT	0.733910	5.299128e-19	9.181799e-15	2.961871e-16
32	8002133	8104298	NM_004553	NDUFS6	0.733648	5.532652e-19	9.586426e-15	2.995758e-16
33	8002133	8049180	NM_004846	EIF4E2	0.731873	7.407129e-19	1.283433e-14	3.889192e-16
34	8002133	8087100	NM_003365	UQCRC1	0.730649	9.044364e-19	1.567117e-14	4.609168e-16
35	8002133	8019772	NM_005782	THOC4	0.728989	1.183889e-18	2.051324e-14	5.860926e-16
36	8002133	7921738	NM_007122	USF1	0.727610	1.478411e-18	2.561643e-14	7.115676e-16
37	8002133	8030007	NM_001425	EMP3	0.726139	1.870794e-18	3.241524e-14	8.760876e-16
38	8002133	8177717	NM_018950	HLA-F	0.726127	1.874455e-18	3.247867e-14	8.547019e-16
39	8002133	7991386	NM_006384	CIB1	0.725526	2.062826e-18	3.574259e-14	9.164766e-16
40	8002133	7939068	NM_001028	RPS25	0.724174	2.556175e-18	4.429084e-14	1.107271e-15
41	8002133	8179019	NM_018950	HLA-F	0.720936	4.250342e-18	7.364567e-14	1.796236e-15
42	8002133	8043209	NM_016494	RNF181	0.720913	4.265935e-18	7.391585e-14	1.759901e-15
43	8002133	8038382	NM_017916	PIH1D1	0.719286	5.493275e-18	9.518197e-14	2.213534e-15
44	8002133	8009227	NM_002805	PSMC5	0.718669	6.042865e-18	1.047047e-13	2.379653e-15
45	8002133	7978174	NM_014169	CHMP4A	0.718514	6.189446e-18	1.072445e-13	2.383212e-15
46	8002133	7977879	NM_001144932	PSMB5	0.712376	1.576462e-17	2.731535e-13	5.938119e-15
47	8002133	8173729	NM_001029891	PGAM4	0.712202	1.618150e-17	2.803769e-13	5.965465e-15
48	8002133	8176282	NM_001029891	PGAM4	0.712202	1.618150e-17	2.803769e-13	5.841185e-15
49	8002133	8010686	NM_001002244	ANAPC11	0.711211	1.877288e-17	3.252777e-13	6.638320e-15
50	8002133	7994659	NM_017458	MVP	0.711030	1.928754e-17	3.341953e-13	6.683906e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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