[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11193.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11193	8043718	NM_001862	COX5B		cytochrome c oxidase subunit Vb

Fetching correlation data, please wait...
Getting list of correlations for id 11193.
Getting list of p-values for id 11193.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.102 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8043718	8169659	NM_004541	NDUFA1	0.806875	2.741123e-25	4.749543e-21	4.749543e-21
2	8043718	8116020	NM_006816	LMAN2	0.797346	2.522867e-24	4.371372e-20	2.185686e-20
3	8043718	8002133	NM_002801	PSMB10	0.777273	1.878801e-22	3.255399e-18	1.085133e-18
4	8043718	8043100	NM_021103	TMSB10	0.760090	5.348067e-21	9.266596e-17	2.316649e-17
5	8043718	8165309	NM_003792	EDF1	0.750783	2.924205e-20	5.066769e-16	1.013354e-16
6	8043718	8073343	CR605850		0.747309	5.409260e-20	9.372625e-16	1.562104e-16
7	8043718	7963911	NM_001780	CD63	0.745112	7.941714e-20	1.376061e-15	1.965801e-16
8	8043718	7996490	NM_014187	TMEM208	0.741929	1.375380e-19	2.383121e-15	2.978901e-16
9	8043718	8134552	NM_005720	ARPC1B	0.736124	3.669276e-19	6.357755e-15	7.064173e-16
10	8043718	7920271	NM_019554	S100A4	0.731174	8.302533e-19	1.438580e-14	1.438580e-15
11	8043718	8009227	NM_002805	PSMC5	0.731151	8.334791e-19	1.444169e-14	1.312881e-15
12	8043718	7897404	NM_007262	PARK7	0.730293	9.583620e-19	1.660554e-14	1.383795e-15
13	8043718	7994756	NM_002720	PPP4C	0.729124	1.158351e-18	2.007074e-14	1.543903e-15
14	8043718	8134740	NM_001008395	C7orf59	0.726699	1.710698e-18	2.964127e-14	2.117233e-15
15	8043718	8178598	NM_001288	CLIC1	0.724892	2.281175e-18	3.952591e-14	2.635061e-15
16	8043718	7955768	NM_002624	PFDN5	0.724090	2.590328e-18	4.488261e-14	2.805163e-15
17	8043718	8179827	NM_001288	CLIC1	0.723791	2.715579e-18	4.705283e-14	2.767814e-15
18	8043718	7978201	NM_006156	NEDD8	0.723659	2.772717e-18	4.804286e-14	2.669048e-15
19	8043718	7959153	NM_004373	COX6A1	0.723171	2.994518e-18	5.188601e-14	2.730842e-15
20	8043718	7940688	NM_002696	POLR2G	0.721875	3.670764e-18	6.360332e-14	3.180166e-15
21	8043718	7973564	NM_176783	PSME1	0.720606	4.475053e-18	7.753925e-14	3.692345e-15
22	8043718	8119153	NM_004373	COX6A1	0.720364	4.647105e-18	8.052040e-14	3.660018e-15
23	8043718	7956211	NM_021019	MYL6	0.719795	5.076374e-18	8.795833e-14	3.824275e-15
24	8043718	8125059	NM_001288	CLIC1	0.717050	7.753267e-18	1.343409e-13	5.597536e-15
25	8043718	7899737	NM_003757	EIF3I	0.715789	9.402204e-18	1.629120e-13	6.516479e-15
26	8043718	8136602	NM_004546	NDUFB2	0.714932	1.071320e-17	1.856277e-13	7.139526e-15
27	8043718	7930304	NM_004832	GSTO1	0.711473	1.805171e-17	3.127819e-13	1.158452e-14
28	8043718	7912670	NM_006004	UQCRH	0.710569	2.066403e-17	3.580457e-13	1.278735e-14
29	8043718	8074969	NM_001355	DDT	0.710347	2.135749e-17	3.700613e-13	1.276073e-14
30	8043718	8027932	NM_001863	COX6B1	0.710324	2.143184e-17	3.713496e-13	1.237832e-14
31	8043718	8089249	NM_000986	RPL24	0.709292	2.498794e-17	4.329661e-13	1.396665e-14
32	8043718	8028514	NM_013234	EIF3K	0.708393	2.854795e-17	4.946503e-13	1.545782e-14
33	8043718	8030007	NM_001425	EMP3	0.707640	3.190241e-17	5.527730e-13	1.675070e-14
34	8043718	8019772	NM_005782	THOC4	0.706682	3.672735e-17	6.363748e-13	1.871691e-14
35	8043718	8019273	NM_005782	THOC4	0.704324	5.182864e-17	8.980349e-13	2.565814e-14
36	8043718	7997702	NM_001861	COX4I1	0.702737	6.521643e-17	1.130005e-12	3.138903e-14
37	8043718	8053417	NM_001747	CAPG	0.700290	9.269321e-17	1.606095e-12	4.340798e-14
38	8043718	8134589	NM_003910	BUD31	0.699180	1.085918e-16	1.881570e-12	4.951500e-14
39	8043718	7939068	NM_001028	RPS25	0.698759	1.152873e-16	1.997584e-12	5.122009e-14
40	8043718	7991386	NM_006384	CIB1	0.697234	1.430595e-16	2.478793e-12	6.196982e-14
41	8043718	8064502	NM_003091	SNRPB	0.691388	3.233159e-16	5.602095e-12	1.366365e-13
42	8043718	8115158	NM_001025071	RPS14	0.691185	3.324624e-16	5.760576e-12	1.371566e-13
43	8043718	7941927	NM_003977	AIP	0.690196	3.808723e-16	6.599375e-12	1.534738e-13
44	8043718	8072876	NM_002305	LGALS1	0.690174	3.820546e-16	6.619860e-12	1.504514e-13
45	8043718	7935810	NM_005004	NDUFB8	0.686554	6.254346e-16	1.083691e-11	2.408201e-13
46	8043718	8084945	ENST00000439929		0.684260	8.515632e-16	1.475504e-11	3.207616e-13
47	8043718	8104298	NM_004553	NDUFS6	0.683683	9.199096e-16	1.593927e-11	3.391335e-13
48	8043718	8172358	NM_153477	UXT	0.683168	9.853827e-16	1.707373e-11	3.557026e-13
49	8043718	7941478	NM_005146	SART1	0.682643	1.056696e-15	1.830937e-11	3.736607e-13
50	8043718	7949603	NM_015399	BRMS1	0.682453	1.083819e-15	1.877933e-11	3.755867e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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