[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 10725.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
10725	7930304	NM_004832	GSTO1		glutathione S-transferase omega 1

Fetching correlation data, please wait...
Getting list of correlations for id 10725.
Getting list of p-values for id 10725.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.091 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7930304	8169659	NM_004541	NDUFA1	0.841403	2.742571e-29	4.752052e-25	4.752052e-25
2	7930304	7940688	NM_002696	POLR2G	0.816590	2.503133e-26	4.337179e-22	2.168590e-22
3	7930304	7920271	NM_019554	S100A4	0.816089	2.841113e-26	4.922796e-22	1.640932e-22
4	7930304	7963911	NM_001780	CD63	0.813874	4.956112e-26	8.587456e-22	2.146864e-22
5	7930304	8049180	NM_004846	EIF4E2	0.806541	2.968943e-25	5.144288e-21	1.028858e-21
6	7930304	8115158	NM_001025071	RPS14	0.781661	7.613948e-23	1.319269e-18	2.198781e-19
7	7930304	8002133	NM_002801	PSMB10	0.777549	1.776159e-22	3.077550e-18	4.396501e-19
8	7930304	8116020	NM_006816	LMAN2	0.773821	3.768838e-22	6.530265e-18	8.162832e-19
9	7930304	8160587	NM_002493	NDUFB6	0.769418	9.000283e-22	1.559479e-17	1.732755e-18
10	7930304	7897404	NM_007262	PARK7	0.765023	2.105675e-21	3.648504e-17	3.648504e-18
11	7930304	7968297	NM_015932	POMP	0.763245	2.953658e-21	5.117803e-17	4.652548e-18
12	7930304	8074969	NM_001355	DDT	0.761275	4.284030e-21	7.422939e-17	6.185783e-18
13	7930304	7973564	NM_176783	PSME1	0.761134	4.398481e-21	7.621248e-17	5.862498e-18
14	7930304	8064502	NM_003091	SNRPB	0.760404	5.042839e-21	8.737727e-17	6.241234e-18
15	7930304	7905571	NM_002965	S100A9	0.757163	9.199255e-21	1.593955e-16	1.062637e-17
16	7930304	8039796	NM_014453	CHMP2A	0.753487	1.798854e-20	3.116875e-16	1.948047e-17
17	7930304	8139706	NM_014302	SEC61G	0.752543	2.132840e-20	3.695571e-16	2.173865e-17
18	7930304	8067382	NM_002792	PSMA7	0.751967	2.365811e-20	4.099242e-16	2.277356e-17
19	7930304	8038792	NM_001985	ETFB	0.749695	3.549317e-20	6.149901e-16	3.236790e-17
20	7930304	8000323	NM_005003	NDUFAB1	0.749644	3.581603e-20	6.205844e-16	3.102922e-17
21	7930304	8136602	NM_004546	NDUFB2	0.748165	4.652835e-20	8.061967e-16	3.839032e-17
22	7930304	7956211	NM_021019	MYL6	0.744423	8.949853e-20	1.550741e-15	7.048823e-17
23	7930304	8028514	NM_013234	EIF3K	0.740125	1.871020e-19	3.241916e-15	1.409529e-16
24	7930304	8111129	NM_033414	ZNF622	0.737713	2.812161e-19	4.872632e-15	2.030263e-16
25	7930304	7906662	NM_016406	UFC1	0.736583	3.398380e-19	5.888373e-15	2.355349e-16
26	7930304	7997702	NM_001861	COX4I1	0.736479	3.458168e-19	5.991968e-15	2.304603e-16
27	7930304	7978201	NM_006156	NEDD8	0.735208	4.273699e-19	7.405038e-15	2.742607e-16
28	7930304	7983512	NM_021199	SQRDL	0.732568	6.609697e-19	1.145262e-14	4.090222e-16
29	7930304	8001782	NM_002954	RPS27A	0.727184	1.582863e-18	2.742626e-14	9.457332e-16
30	7930304	7959078	GENSCAN00000059320		0.727092	1.606468e-18	2.783527e-14	9.278423e-16
31	7930304	8134589	NM_003910	BUD31	0.726719	1.705309e-18	2.954790e-14	9.531580e-16
32	7930304	8179827	NM_001288	CLIC1	0.724520	2.420049e-18	4.193219e-14	1.310381e-15
33	7930304	8010050	NM_182565	FAM100B	0.723555	2.818842e-18	4.884208e-14	1.480063e-15
34	7930304	8134552	NM_005720	ARPC1B	0.723301	2.933681e-18	5.083188e-14	1.495055e-15
35	7930304	7958152	NM_002629	PGAM1	0.721905	3.653426e-18	6.330291e-14	1.808655e-15
36	7930304	8178598	NM_001288	CLIC1	0.720205	4.762816e-18	8.252531e-14	2.292370e-15
37	7930304	8077770	NM_018462	C3orf10	0.719888	5.003821e-18	8.670121e-14	2.343276e-15
38	7930304	7959597	NM_006815	TMED2	0.719617	5.218158e-18	9.041503e-14	2.379343e-15
39	7930304	7929624	NM_002629	PGAM1	0.718419	6.280594e-18	1.088238e-13	2.790355e-15
40	7930304	8009227	NM_002805	PSMC5	0.717358	7.394690e-18	1.281278e-13	3.203195e-15
41	7930304	7897172	NM_182752	TPRG1L	0.717155	7.629193e-18	1.321910e-13	3.224171e-15
42	7930304	8109750	NM_001002	RPLP0	0.716435	8.518818e-18	1.476056e-13	3.514418e-15
43	7930304	8122136	NM_001016	RPS12	0.715814	9.366293e-18	1.622898e-13	3.774181e-15
44	7930304	8164067	NM_002799	PSMB7	0.714603	1.126075e-17	1.951151e-13	4.434433e-15
45	7930304	8165309	NM_003792	EDF1	0.714208	1.195642e-17	2.071689e-13	4.603754e-15
46	7930304	8043718	NM_001862	COX5B	0.711473	1.805171e-17	3.127819e-13	6.799607e-15
47	7930304	8020058	NM_021074	NDUFV2	0.711446	1.812531e-17	3.140572e-13	6.682068e-15
48	7930304	7990566	NM_000126	ETFA	0.711353	1.837825e-17	3.184400e-13	6.634166e-15
49	7930304	8042052	NM_002954	RPS27A	0.711054	1.922082e-17	3.330392e-13	6.796719e-15
50	7930304	8125059	NM_001288	CLIC1	0.710895	1.968252e-17	3.410390e-13	6.820779e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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