[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16390	8010050	NM_182565	FAM100B		family with sequence similarity 100, member B

Fetching correlation data, please wait...
Getting list of correlations for id 16390.
Getting list of p-values for id 16390.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.156 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8010050	8039796	NM_014453	CHMP2A	0.801686	9.319002e-25	1.614704e-20	1.614704e-20
2	8010050	7897172	NM_182752	TPRG1L	0.779788	1.122416e-22	1.944810e-18	9.724052e-19
3	8010050	8073960	NM_001001852	PIM3	0.770829	6.823530e-22	1.182313e-17	3.941044e-18
4	8010050	7920271	NM_019554	S100A4	0.768902	9.955299e-22	1.724955e-17	4.312387e-18
5	8010050	7937465	NM_006755	TALDO1	0.749345	3.776638e-20	6.543780e-16	1.308756e-16
6	8010050	7905571	NM_002965	S100A9	0.749289	3.814768e-20	6.609849e-16	1.101642e-16
7	8010050	8169659	NM_004541	NDUFA1	0.747443	5.283824e-20	9.155283e-16	1.307898e-16
8	8010050	7963911	NM_001780	CD63	0.747266	5.450704e-20	9.444435e-16	1.180554e-16
9	8010050	7958414	NM_014301	ISCU	0.744582	8.706559e-20	1.508586e-15	1.676206e-16
10	8010050	8122136	NM_001016	RPS12	0.731265	8.180088e-19	1.417364e-14	1.417364e-15
11	8010050	7956211	NM_021019	MYL6	0.730456	9.332737e-19	1.617083e-14	1.470076e-15
12	8010050	7930304	NM_004832	GSTO1	0.723555	2.818842e-18	4.884208e-14	4.070173e-15
13	8010050	7990020	NM_006305	ANP32A	0.718823	5.900789e-18	1.022430e-13	7.864844e-15
14	8010050	7983173	NM_012142	CCNDBP1	0.718669	6.043250e-18	1.047114e-13	7.479386e-15
15	8010050	8139706	NM_014302	SEC61G	0.704986	4.706392e-17	8.154766e-13	5.436511e-14
16	8010050	7983512	NM_021199	SQRDL	0.701021	8.348627e-17	1.446567e-12	9.041041e-14
17	8010050	8134552	NM_005720	ARPC1B	0.697215	1.434535e-16	2.485618e-12	1.462128e-13
18	8010050	8041508	NM_012413	QPCT	0.696370	1.615865e-16	2.799810e-12	1.555450e-13
19	8010050	8064502	NM_003091	SNRPB	0.696345	1.621617e-16	2.809776e-12	1.478829e-13
20	8010050	7897404	NM_007262	PARK7	0.696105	1.677208e-16	2.906098e-12	1.453049e-13
21	8010050	7913665	ENST00000410831		0.695338	1.867726e-16	3.236209e-12	1.541052e-13
22	8010050	7906764	NM_002155	HSPA6	0.695315	1.873734e-16	3.246619e-12	1.475736e-13
23	8010050	8134589	NM_003910	BUD31	0.694682	2.047016e-16	3.546865e-12	1.542115e-13
24	8010050	7929624	NM_002629	PGAM1	0.693919	2.276829e-16	3.945062e-12	1.643776e-13
25	8010050	8018364	NM_002086	GRB2	0.692382	2.818589e-16	4.883769e-12	1.953508e-13
26	8010050	7989661	NM_002537	OAZ2	0.690766	3.522071e-16	6.102692e-12	2.347189e-13
27	8010050	7978201	NM_006156	NEDD8	0.690607	3.599918e-16	6.237578e-12	2.310214e-13
28	8010050	7940688	NM_002696	POLR2G	0.689229	4.348289e-16	7.534280e-12	2.690814e-13
29	8010050	8038792	NM_001985	ETFB	0.688808	4.605144e-16	7.979332e-12	2.751494e-13
30	8010050	7936871	NM_000274	OAT	0.687625	5.409477e-16	9.373000e-12	3.124333e-13
31	8010050	8162276	NM_005384	NFIL3	0.687004	5.885052e-16	1.019703e-11	3.289364e-13
32	8010050	8042515	NM_006196	PCBP1	0.686906	5.963298e-16	1.033261e-11	3.228940e-13
33	8010050	8018305	NM_016185	HN1	0.686644	6.178706e-16	1.070584e-11	3.244195e-13
34	8010050	7958152	NM_002629	PGAM1	0.686542	6.263866e-16	1.085340e-11	3.192177e-13
35	8010050	7935421	NM_012083	FRAT2	0.681519	1.226856e-15	2.125774e-11	6.073639e-13
36	8010050	7977657	NM_031314	HNRNPC	0.681459	1.236549e-15	2.142568e-11	5.951578e-13
37	8010050	8074969	NM_001355	DDT	0.680833	1.343387e-15	2.327687e-11	6.291046e-13
38	8010050	8132646	NM_031443	CCM2	0.679516	1.597997e-15	2.768849e-11	7.286444e-13
39	8010050	7900922	NM_004047	ATP6V0B	0.679416	1.619185e-15	2.805562e-11	7.193749e-13
40	8010050	7916372	NM_004872	TMEM59	0.679054	1.698044e-15	2.942202e-11	7.355504e-13
41	8010050	7994756	NM_002720	PPP4C	0.678516	1.821955e-15	3.156902e-11	7.699761e-13
42	8010050	8025500	NM_024292	UBL5	0.678458	1.835810e-15	3.180909e-11	7.573592e-13
43	8010050	8088820	NM_012234	RYBP	0.678255	1.885369e-15	3.266778e-11	7.597159e-13
44	8010050	7936559	NM_173791	PDZD8	0.677450	2.094255e-15	3.628716e-11	8.247082e-13
45	8010050	7920515	NM_017582	UBE2Q1	0.675661	2.642298e-15	4.578309e-11	1.017402e-12
46	8010050	7915758	NM_021639	GPBP1L1	0.675443	2.717872e-15	4.709257e-11	1.023752e-12
47	8010050	8179827	NM_001288	CLIC1	0.675042	2.862579e-15	4.959991e-11	1.055317e-12
48	8010050	7938880	NM_001098520	HTATIP2	0.674081	3.240119e-15	5.614154e-11	1.169615e-12
49	8010050	7965480	NM_002629	PGAM1	0.673735	3.387681e-15	5.869834e-11	1.197925e-12
50	8010050	7928752	NM_014394	GHITM	0.673619	3.438467e-15	5.957831e-11	1.191566e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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