[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16737	8042515	NM_006196	PCBP1		poly(rC) binding protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 16737.
Getting list of p-values for id 16737.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8042515	7920515	NM_017582	UBE2Q1	0.812305	7.317543e-26	1.267911e-21	1.267911e-21
2	8042515	8019762			0.787781	2.085023e-23	3.612719e-19	1.806359e-19
3	8042515	7976648	NM_001099402	CCNK	0.772229	5.174916e-22	8.966578e-18	2.988859e-18
4	8042515	8164607	NM_015033	FNBP1	0.759502	5.966766e-21	1.033862e-16	2.584654e-17
5	8042515	7944285	NM_001655	ARCN1	0.757619	8.458228e-21	1.465557e-16	2.931114e-17
6	8042515	7948814	NM_001079559	HNRNPUL2	0.753781	1.705707e-20	2.955479e-16	4.925799e-17
7	8042515	7940798	NM_017490	MARK2	0.751466	2.588289e-20	4.484728e-16	6.406754e-17
8	8042515	8163784	NM_012164	FBXW2	0.751444	2.598545e-20	4.502499e-16	5.628124e-17
9	8042515	7977003	NM_015156	RCOR1	0.749057	3.974720e-20	6.886997e-16	7.652219e-17
10	8042515	7990487	NM_015477	SIN3A	0.745754	7.101778e-20	1.230525e-15	1.230525e-16
11	8042515	8017711	NM_006572	GNA13	0.744976	8.131508e-20	1.408946e-15	1.280860e-16
12	8042515	8128034	NM_018064	AKIRIN2	0.743220	1.101826e-19	1.909135e-15	1.590946e-16
13	8042515	7916747	NM_002227	JAK1	0.741189	1.560932e-19	2.704626e-15	2.080482e-16
14	8042515	8094574	NM_015173	TBC1D1	0.740694	1.698459e-19	2.942919e-15	2.102085e-16
15	8042515	8018364	NM_002086	GRB2	0.739502	2.079548e-19	3.603233e-15	2.402155e-16
16	8042515	8006850	NM_016507	CDK12	0.739380	2.122873e-19	3.678302e-15	2.298939e-16
17	8042515	8160914	NM_007126	VCP	0.738672	2.392877e-19	4.146138e-15	2.438904e-16
18	8042515	8079950	NM_002070	GNAI2	0.736349	3.534229e-19	6.123759e-15	3.402089e-16
19	8042515	8157125	NM_002874	RAD23B	0.735798	3.874213e-19	6.712849e-15	3.533078e-16
20	8042515	8034762	NM_002730	PRKACA	0.732053	7.191880e-19	1.246137e-14	6.230686e-16
21	8042515	7987172	NM_020154	C15orf24	0.730458	9.329874e-19	1.616587e-14	7.698034e-16
22	8042515	8158783	NM_005085	NUP214	0.729052	1.171818e-18	2.030410e-14	9.229136e-16
23	8042515	7973214	NM_014828	TOX4	0.728665	1.247348e-18	2.161280e-14	9.396868e-16
24	8042515	8099340	NM_017491	WDR1	0.726408	1.792035e-18	3.105059e-14	1.293775e-15
25	8042515	7980833	NM_032560	SMEK1	0.725937	1.932144e-18	3.347825e-14	1.339130e-15
26	8042515	7978718	NM_006364	SEC23A	0.725271	2.148153e-18	3.722104e-14	1.431579e-15
27	8042515	7904974	NR_003242	C1orf152	0.725079	2.214438e-18	3.836956e-14	1.421095e-15
28	8042515	8090490	NM_002950	RPN1	0.723863	2.684830e-18	4.652005e-14	1.661430e-15
29	8042515	7945902	NM_016320	NUP98	0.722695	3.227245e-18	5.591847e-14	1.928223e-15
30	8042515	8084963	NM_002577	PAK2	0.721560	3.855747e-18	6.680852e-14	2.226951e-15
31	8042515	8076515	NM_014570	ARFGAP3	0.721436	3.931360e-18	6.811868e-14	2.197377e-15
32	8042515	7980463	NM_012245	SNW1	0.720533	4.526094e-18	7.842363e-14	2.450738e-15
33	8042515	7926368	NM_003380	VIM	0.720381	4.634174e-18	8.029632e-14	2.433222e-15
34	8042515	8101324	NM_031370	HNRNPD	0.716677	8.208817e-18	1.422342e-13	4.183358e-15
35	8042515	8019250	NM_000918	P4HB	0.716484	8.455470e-18	1.465079e-13	4.185941e-15
36	8042515	7945132	NM_002017	FLI1	0.714202	1.196663e-17	2.073458e-13	5.759605e-15
37	8042515	8145954	NM_006283	TACC1	0.714074	1.220185e-17	2.114215e-13	5.714095e-15
38	8042515	8063242	NM_006420	ARFGEF2	0.712940	1.448246e-17	2.509376e-13	6.603622e-15
39	8042515	7952557	NM_003139	SRPR	0.712733	1.493949e-17	2.588565e-13	6.637346e-15
40	8042515	8115168	NM_018047	RBM22	0.710003	2.248319e-17	3.895662e-13	9.739155e-15
41	8042515	7999044	NM_004380	CREBBP	0.709190	2.536994e-17	4.395850e-13	1.072159e-14
42	8042515	7915758	NM_021639	GPBP1L1	0.709068	2.582953e-17	4.475483e-13	1.065591e-14
43	8042515	8171684	NM_031892	SH3KBP1	0.708355	2.870551e-17	4.973804e-13	1.156699e-14
44	8042515	8124059	NM_005124	NUP153	0.708337	2.878298e-17	4.987227e-13	1.133461e-14
45	8042515	7911619	NM_002074	GNB1	0.707375	3.316959e-17	5.747294e-13	1.277177e-14
46	8042515	7924526	NM_005426	TP53BP2	0.707101	3.453709e-17	5.984241e-13	1.300922e-14
47	8042515	8062213	NM_016436	PHF20	0.706741	3.641152e-17	6.309024e-13	1.342346e-14
48	8042515	8001185	NM_005880	DNAJA2	0.706640	3.695226e-17	6.402718e-13	1.333900e-14
49	8042515	8148674	NM_139021	MAPK15	-0.706040	4.035079e-17	6.991582e-13	1.426853e-14
50	8042515	7960594	NM_001273	CHD4	0.705917	4.108580e-17	7.118937e-13	1.423787e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation