[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16735.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16735	8177003	NM_001636	SLC25A6		solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6

Fetching correlation data, please wait...
Getting list of correlations for id 16735.
Getting list of p-values for id 16735.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177003	8171111	NM_001636	SLC25A6	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177003	8154727	AF091236	LOC138412	0.810584	1.117183e-25	1.935743e-21	9.678717e-22
3	8177003	8064502	NM_003091	SNRPB	0.790727	1.100935e-23	1.907591e-19	6.358636e-20
4	8177003	7942586	NM_001005	RPS3	0.783845	4.818779e-23	8.349499e-19	2.087375e-19
5	8177003	8028514	NM_013234	EIF3K	0.775723	2.572032e-22	4.456559e-18	8.913119e-19
6	8177003	8029129	NM_001022	RPS19	0.763096	3.038519e-21	5.264842e-17	8.774736e-18
7	8177003	7913256	NM_005216	DDOST	0.762418	3.454330e-21	5.985317e-17	8.550453e-18
8	8177003	7911559	NM_017971	MRPL20	0.759564	5.898371e-21	1.022011e-16	1.277514e-17
9	8177003	8039939	NM_017971	MRPL20	0.759564	5.898371e-21	1.022011e-16	1.135568e-17
10	8177003	8011759	NM_005022	PFN1	0.756144	1.109355e-20	1.922179e-16	1.922179e-17
11	8177003	8013348	NM_002952	RPS2	0.754930	1.384547e-20	2.399004e-16	2.180913e-17
12	8177003	8032730	NM_001961	EEF2	0.752517	2.143014e-20	3.713201e-16	3.094334e-17
13	8177003	8019273	NM_005782	THOC4	0.752143	2.292029e-20	3.971399e-16	3.054923e-17
14	8177003	8172154	NM_002952	RPS2	0.750823	2.903242e-20	5.030448e-16	3.593177e-17
15	8177003	8172905	NM_004493	HSD17B10	0.750013	3.354635e-20	5.812576e-16	3.875050e-17
16	8177003	7998655	NM_002952	RPS2	0.749723	3.531713e-20	6.119399e-16	3.824625e-17
17	8177003	7959078	GENSCAN00000059320		0.744892	8.250393e-20	1.429546e-15	8.409092e-17
18	8177003	7948192	NM_003146	SSRP1	0.742216	1.309305e-19	2.268632e-15	1.260351e-16
19	8177003	8001782	NM_002954	RPS27A	0.741840	1.396449e-19	2.419627e-15	1.273488e-16
20	8177003	7940688	NM_002696	POLR2G	0.741071	1.592591e-19	2.759482e-15	1.379741e-16
21	8177003	8019772	NM_005782	THOC4	0.739910	1.940430e-19	3.362183e-15	1.601039e-16
22	8177003	7897404	NM_007262	PARK7	0.739830	1.967206e-19	3.408578e-15	1.549353e-16
23	8177003	8116020	NM_006816	LMAN2	0.734954	4.458059e-19	7.724479e-15	3.358469e-16
24	8177003	8165309	NM_003792	EDF1	0.730214	9.707652e-19	1.682045e-14	7.008521e-16
25	8177003	7949792	NM_005608	PTPRCAP	0.729376	1.112097e-18	1.926930e-14	7.707721e-16
26	8177003	8115158	NM_001025071	RPS14	0.728817	1.217246e-18	2.109121e-14	8.112005e-16
27	8177003	7989619	NM_000942	PPIB	0.727097	1.605011e-18	2.781002e-14	1.030001e-15
28	8177003	8119648	NM_057161	KLHDC3	0.726214	1.848379e-18	3.202686e-14	1.143816e-15
29	8177003	8036737	NM_001020	RPS16	0.724161	2.561306e-18	4.437975e-14	1.530336e-15
30	8177003	8042052	NM_002954	RPS27A	0.723537	2.826623e-18	4.897689e-14	1.632563e-15
31	8177003	7899753	NM_005356	LCK	0.721886	3.663930e-18	6.348491e-14	2.047900e-15
32	8177003	8114320	NM_006805	HNRNPA0	0.721210	4.072707e-18	7.056780e-14	2.205244e-15
33	8177003	8153903	NM_000973	RPL8	0.719883	5.007320e-18	8.676184e-14	2.629147e-15
34	8177003	8078905	NM_002295	RPSA	0.718628	6.081016e-18	1.053658e-13	3.098993e-15
35	8177003	8036777	NM_001436	FBL	0.718552	6.152994e-18	1.066129e-13	3.046084e-15
36	8177003	7918050	NM_002295	RPSA	0.717850	6.856288e-18	1.187989e-13	3.299970e-15
37	8177003	7952056	NM_000732	CD3D	0.717653	7.067361e-18	1.224562e-13	3.309626e-15
38	8177003	8023063	NM_001001937	ATP5A1	0.716351	8.628560e-18	1.495071e-13	3.934396e-15
39	8177003	7948476	NM_014502	PRPF19	0.715389	9.992359e-18	1.731376e-13	4.439426e-15
40	8177003	8062409	NM_030877	CTNNBL1	0.715207	1.027395e-17	1.780167e-13	4.450418e-15
41	8177003	7934753	NM_001099692	EIF5AL1	0.713744	1.282665e-17	2.222473e-13	5.420666e-15
42	8177003	8110803	NM_030782	CLPTM1L	0.713360	1.359346e-17	2.355338e-13	5.607949e-15
43	8177003	8009227	NM_002805	PSMC5	0.710400	2.119055e-17	3.671687e-13	8.538806e-15
44	8177003	8109750	NM_001002	RPLP0	0.710304	2.149626e-17	3.724656e-13	8.465128e-15
45	8177003	7908407	NM_002954	RPS27A	0.709962	2.261798e-17	3.919018e-13	8.708929e-15
46	8177003	8137252	NM_130759	GIMAP1	0.709164	2.546550e-17	4.412407e-13	9.592190e-15
47	8177003	8076209	NM_000967	RPL3	0.708387	2.857007e-17	4.950336e-13	1.053263e-14
48	8177003	7928630			0.707819	3.107065e-17	5.383611e-13	1.121586e-14
49	8177003	8007715	NM_021079	NMT1	0.707661	3.180377e-17	5.510640e-13	1.124620e-14
50	8177003	8026868	NM_000980	RPL18A	0.707549	3.233026e-17	5.601864e-13	1.120373e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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