[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15122.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15122	8110841	NM_024830	LPCAT1		lysophosphatidylcholine acyltransferase 1

Fetching correlation data, please wait...
Getting list of correlations for id 15122.
Getting list of p-values for id 15122.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8110841	8009685	NM_004252	SLC9A3R1	0.744499	8.832715e-20	1.530444e-15	1.530444e-15
2	8110841	8003773	NM_015085	RAP1GAP2	0.743026	1.139164e-19	1.973829e-15	9.869145e-16
3	8110841	7995492	NM_001114	ADCY7	0.729739	1.048555e-18	1.816832e-14	6.056106e-15
4	8110841	8011759	NM_005022	PFN1	0.726765	1.692854e-18	2.933209e-14	7.333022e-15
5	8110841	8163569	NM_030767	AKNA	0.726688	1.713732e-18	2.969383e-14	5.938766e-15
6	8110841	8004030	NM_015528	RNF167	0.721098	4.144392e-18	7.180987e-14	1.196831e-14
7	8110841	7904974	NR_003242	C1orf152	0.720668	4.432311e-18	7.679865e-14	1.097124e-14
8	8110841	8051814	NM_006887	ZFP36L2	0.708192	2.940541e-17	5.095075e-13	6.368844e-14
9	8110841	7949264	NM_006795	EHD1	0.705608	4.298110e-17	7.447335e-13	8.274817e-14
10	8110841	7941797	NM_001619	ADRBK1	0.704044	5.397686e-17	9.352570e-13	9.352570e-14
11	8110841	7968890	NM_003646	DGKZ	0.702796	6.467152e-17	1.120563e-12	1.018694e-13
12	8110841	7936884	NM_014661	FAM53B	0.698939	1.123706e-16	1.947046e-12	1.622538e-13
13	8110841	7945275	NM_052875	VPS26B	0.697739	1.332055e-16	2.308052e-12	1.775424e-13
14	8110841	7967331	NM_024667	VPS37B	0.689127	4.409096e-16	7.639641e-12	5.456887e-13
15	8110841	7898161	NM_024329	EFHD2	0.687590	5.435155e-16	9.417492e-12	6.278328e-13
16	8110841	8003348	NM_178841	RNF166	0.685754	6.967085e-16	1.207187e-11	7.544918e-13
17	8110841	8176026	NM_001456	FLNA	0.685649	7.066718e-16	1.224450e-11	7.202648e-13
18	8110841	8115783	NM_005990	STK10	0.685045	7.664345e-16	1.328001e-11	7.377784e-13
19	8110841	8139433	NM_033054	MYO1G	0.684246	8.531691e-16	1.478286e-11	7.780453e-13
20	8110841	7921014	NM_005920	MEF2D	0.675882	2.567645e-15	4.448959e-11	2.224479e-12
21	8110841	7994826	NM_002209	ITGAL	0.674200	3.190993e-15	5.529034e-11	2.632873e-12
22	8110841	8024358	NM_001319	CSNK1G2	0.670567	5.076877e-15	8.796705e-11	3.998502e-12
23	8110841	7937802	NM_004356	CD81	0.670409	5.179735e-15	8.974927e-11	3.902142e-12
24	8110841	8024170	NM_012292	HMHA1	0.669512	5.802542e-15	1.005406e-10	4.189193e-12
25	8110841	8132592	NM_002541	OGDH	0.663561	1.220865e-14	2.115392e-10	8.461568e-12
26	8110841	7920877	NM_004723	ARHGEF2	0.663551	1.222342e-14	2.117952e-10	8.145968e-12
27	8110841	8169859	NM_018990	SASH3	0.662451	1.399927e-14	2.425653e-10	8.983899e-12
28	8110841	7947681	NM_004308	ARHGAP1	0.660231	1.837433e-14	3.183721e-10	1.137043e-11
29	8110841	8012558	NM_001142633	PIK3R5	0.658958	2.145296e-14	3.717155e-10	1.281778e-11
30	8110841	8048304	NM_021198	CTDSP1	0.657703	2.497741e-14	4.327835e-10	1.442612e-11
31	8110841	7941311	NM_153253	SIPA1	0.657436	2.579529e-14	4.469549e-10	1.441790e-11
32	8110841	8032392	NM_199054	MKNK2	0.656761	2.798114e-14	4.848292e-10	1.515091e-11
33	8110841	8026548	NM_001130524	AP1M1	0.656621	2.845564e-14	4.930509e-10	1.494094e-11
34	8110841	7917649	NM_003243	TGFBR3	0.655717	3.172148e-14	5.496381e-10	1.616583e-11
35	8110841	8006820	NM_006148	LASP1	0.652505	4.652105e-14	8.060702e-10	2.303058e-11
36	8110841	7996081	NM_201524	GPR56	0.650992	5.563153e-14	9.639275e-10	2.677576e-11
37	8110841	8087640	NM_007182	RASSF1	0.650952	5.589345e-14	9.684658e-10	2.617475e-11
38	8110841	7998033	NM_014972	TCF25	0.650611	5.818696e-14	1.008205e-9	2.653172e-11
39	8110841	8011516	NM_174954	ATP2A3	0.650380	5.978819e-14	1.035950e-9	2.656282e-11
40	8110841	8068974	NM_003274	TRAPPC10	0.647995	7.903896e-14	1.369508e-9	3.423770e-11
41	8110841	8075886	NM_000878	IL2RB	0.643508	1.327541e-13	2.300231e-9	5.610319e-11
42	8110841	8010983	NM_021962	ABR	0.641289	1.710244e-13	2.963339e-9	7.055569e-11
43	8110841	7923233	NM_017596	KIF21B	0.640816	1.804557e-13	3.126756e-9	7.271526e-11
44	8110841	8037005	NM_000660	TGFB1	0.639950	1.990794e-13	3.449448e-9	7.839656e-11
45	8110841	8031536	NM_007279	U2AF2	0.639656	2.058007e-13	3.565909e-9	7.924242e-11
46	8110841	7944152	NM_001558	IL10RA	0.639246	2.155573e-13	3.734961e-9	8.119481e-11
47	8110841	8005171	NM_016113	TRPV2	0.638512	2.341284e-13	4.056743e-9	8.631367e-11
48	8110841	8026315	NM_213560	PKN1	0.637847	2.523125e-13	4.371818e-9	9.107955e-11
49	8110841	8079950	NM_002070	GNAI2	0.637494	2.625047e-13	4.548420e-9	9.282489e-11
50	8110841	7981494	NM_001014432	AKT1	0.635958	3.116963e-13	5.400761e-9	1.080152e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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