[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17079	7994769	NM_007074	CORO1A		coronin, actin binding protein, 1A

Fetching correlation data, please wait...
Getting list of correlations for id 17079.
Getting list of p-values for id 17079.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7994769	7994659	NM_017458	MVP	0.831150	5.242971e-28	9.084497e-24	9.084497e-24
2	7994769	7994737	NM_000034	ALDOA	0.799854	1.423030e-24	2.465684e-20	1.232842e-20
3	7994769	7994756	NM_002720	PPP4C	0.799232	1.641480e-24	2.844193e-20	9.480642e-21
4	7994769	8077550	NM_001077525	MTMR14	0.795453	3.866457e-24	6.699411e-20	1.674853e-20
5	7994769	8134552	NM_005720	ARPC1B	0.782427	6.489515e-23	1.124438e-18	2.248877e-19
6	7994769	8013191	NM_002018	FLII	0.781401	8.037645e-23	1.392683e-18	2.321138e-19
7	7994769	8036224	NM_003332	TYROBP	0.777704	1.720683e-22	2.981428e-18	4.259183e-19
8	7994769	8178498	NM_005514	HLA-B	0.774535	3.266661e-22	5.660144e-18	7.075180e-19
9	7994769	8132539	NM_014063	DBNL	0.771876	5.549451e-22	9.615534e-18	1.068393e-18
10	7994769	8061668	NM_002110	HCK	0.768332	1.112416e-21	1.927484e-17	1.927484e-18
11	7994769	7921752	NM_001025598	ARHGAP30	0.767574	1.288509e-21	2.232599e-17	2.029636e-18
12	7994769	8179731			0.767070	1.420616e-21	2.461502e-17	2.051252e-18
13	7994769	8179103	NM_005516	HLA-E	0.766878	1.474271e-21	2.554470e-17	1.964977e-18
14	7994769	8177788	NM_005516	HLA-E	0.766878	1.474271e-21	2.554470e-17	1.824621e-18
15	7994769	8124911	NM_005514	HLA-B	0.765847	1.798101e-21	3.115569e-17	2.077046e-18
16	7994769	8117890	NM_005516	HLA-E	0.765797	1.815249e-21	3.145282e-17	1.965801e-18
17	7994769	8003322	NM_000101	CYBA	0.761552	4.066337e-21	7.045741e-17	4.144554e-18
18	7994769	7937735	NM_002339	LSP1	0.761453	4.142478e-21	7.177672e-17	3.987596e-18
19	7994769	8172333	NM_002621	CFP	0.761206	4.339239e-21	7.518599e-17	3.957157e-18
20	7994769	8177732	NM_002116	HLA-A	0.759871	5.571171e-21	9.653168e-17	4.826584e-18
21	7994769	8087860	NM_007284	TWF2	0.759329	6.161832e-21	1.067661e-16	5.084099e-18
22	7994769	7900922	NM_004047	ATP6V0B	0.756675	1.006348e-20	1.743699e-16	7.925907e-18
23	7994769	8033987	NM_002162	ICAM3	0.751617	2.519034e-20	4.364730e-16	1.897709e-17
24	7994769	8030007	NM_001425	EMP3	0.750902	2.862595e-20	4.960018e-16	2.066674e-17
25	7994769	8088106	NM_001135055	TKT	0.749217	3.863865e-20	6.694919e-16	2.677968e-17
26	7994769	7956593	NM_006812	OS9	0.747999	4.791444e-20	8.302134e-16	3.193129e-17
27	7994769	8025076	NM_005428	VAV1	0.744935	8.188523e-20	1.418825e-15	5.254909e-17
28	7994769	8117800	NM_002116	HLA-A	0.743948	9.716362e-20	1.683554e-15	6.012693e-17
29	7994769	8075910	NM_002872	RAC2	0.743924	9.757920e-20	1.690755e-15	5.830189e-17
30	7994769	8030374	NM_004107	FCGRT	0.741585	1.458799e-19	2.527662e-15	8.425540e-17
31	7994769	7915504	NM_022821	ELOVL1	0.739280	2.159149e-19	3.741158e-15	1.206825e-16
32	7994769	7919856	NM_181746	LASS2	0.739135	2.212789e-19	3.834099e-15	1.198156e-16
33	7994769	8124901	NM_002117	HLA-C	0.738577	2.431457e-19	4.212985e-15	1.276662e-16
34	7994769	7912198	NM_001428	ENO1	0.736577	3.401815e-19	5.894325e-15	1.733625e-16
35	7994769	7914270	NM_006762	LAPTM5	0.735556	4.033399e-19	6.988670e-15	1.996763e-16
36	7994769	8178489			0.734399	4.887528e-19	8.468620e-15	2.352394e-16
37	7994769	8116020	NM_006816	LMAN2	0.731398	8.004591e-19	1.386956e-14	3.748528e-16
38	7994769	7905028	CR541728	LSP1	0.730890	8.696883e-19	1.506909e-14	3.965550e-16
39	7994769	8006812	NM_002795	PSMB3	0.730129	9.841793e-19	1.705288e-14	4.372532e-16
40	7994769	7940051	NM_015457	ZDHHC5	0.729489	1.091920e-18	1.891970e-14	4.729924e-16
41	7994769	8177717	NM_018950	HLA-F	0.726047	1.898515e-18	3.289557e-14	8.023310e-16
42	7994769	8002041	NM_004691	ATP6V0D1	0.725970	1.922019e-18	3.330282e-14	7.929242e-16
43	7994769	8009653	NM_007261	CD300A	0.725941	1.930782e-18	3.345465e-14	7.780152e-16
44	7994769	7897620	NM_002631	PGD	0.725524	2.063417e-18	3.575282e-14	8.125641e-16
45	7994769	8087473	NM_153273	IP6K1	0.724759	2.329978e-18	4.037152e-14	8.971450e-16
46	7994769	8179019	NM_018950	HLA-F	0.722460	3.348910e-18	5.802657e-14	1.261447e-15
47	7994769	7897745	NM_020350	AGTRAP	0.722072	3.559035e-18	6.166741e-14	1.312072e-15
48	7994769	7982531	NM_006305	ANP32A	0.720994	4.212589e-18	7.299153e-14	1.520657e-15
49	7994769	7949496	NM_005507	CFL1	0.719472	5.336963e-18	9.247356e-14	1.887215e-15
50	7994769	8117777	NM_002127	HLA-G	0.719465	5.342911e-18	9.257662e-14	1.851532e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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