[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16904	8125512	NM_000593	TAP1		transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
16905	8178867	NM_000593	TAP1		transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
16906	8180061	NM_000593	TAP1		transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

Fetching correlation data, please wait...
Getting list of correlations for id 16904.
Getting list of p-values for id 16904.
1 of 3 done.
Getting list of correlations for id 16905.
Getting list of p-values for id 16905.
2 of 3 done.
Getting list of correlations for id 16906.
Getting list of p-values for id 16906.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.246 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8180061	8178867	NM_000593	TAP1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125512	8178867	NM_000593	TAP1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178867	8125512	NM_000593	TAP1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8178867	8180061	NM_000593	TAP1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8180061	8125512	NM_000593	TAP1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8125512	8180061	NM_000593	TAP1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8125512	8125483	NM_000544	TAP2	0.867483	5.266897e-33	2.737786e-28	3.911122e-29
8	8180061	8125483	NM_000544	TAP2	0.867483	5.266897e-33	2.737786e-28	3.422232e-29
9	8178867	8125483	NM_000544	TAP2	0.867483	5.266897e-33	2.737786e-28	3.041984e-29
10	8178867	8178841	NM_018833	TAP2	0.856307	2.533583e-31	1.316982e-26	1.316982e-27
11	8125512	8178841	NM_018833	TAP2	0.856307	2.533583e-31	1.316982e-26	1.197256e-27
12	8180061	8178841	NM_018833	TAP2	0.856307	2.533583e-31	1.316982e-26	1.097485e-27
13	8178867	8180034	NM_000544	TAP2	0.850371	1.739384e-30	9.041491e-26	6.954993e-27
14	8125512	8180034	NM_000544	TAP2	0.850371	1.739384e-30	9.041491e-26	6.458208e-27
15	8180061	8180034	NM_000544	TAP2	0.850371	1.739384e-30	9.041491e-26	6.027660e-27
16	8180061	7917516	NM_002053	GBP1	0.841772	2.456664e-29	1.276999e-24	7.981241e-26
17	8178867	7917516	NM_002053	GBP1	0.841772	2.456664e-29	1.276999e-24	7.511756e-26
18	8125512	7917516	NM_002053	GBP1	0.841772	2.456664e-29	1.276999e-24	7.094436e-26
19	8180061	7964119	NM_005419	STAT2	0.825462	2.476567e-27	1.287344e-22	6.775496e-24
20	8125512	7964119	NM_005419	STAT2	0.825462	2.476567e-27	1.287344e-22	6.436721e-24
21	8178867	7964119	NM_005419	STAT2	0.825462	2.476567e-27	1.287344e-22	6.130210e-24
22	8178867	8057744	NM_007315	STAT1	0.823160	4.570119e-27	2.375594e-22	1.079815e-23
23	8180061	8057744	NM_007315	STAT1	0.823160	4.570119e-27	2.375594e-22	1.032867e-23
24	8125512	8057744	NM_007315	STAT1	0.823160	4.570119e-27	2.375594e-22	9.898307e-24
25	8180061	8010426	NM_020954	RNF213	0.816387	2.635028e-26	1.369714e-21	5.478855e-23
26	8178867	8010426	NM_020954	RNF213	0.816387	2.635028e-26	1.369714e-21	5.268130e-23
27	8125512	8010426	NM_020954	RNF213	0.816387	2.635028e-26	1.369714e-21	5.073014e-23
28	8180061	7935337	NM_152309	PIK3AP1	0.815307	3.460900e-26	1.799010e-21	6.425037e-23
29	8178867	7935337	NM_152309	PIK3AP1	0.815307	3.460900e-26	1.799010e-21	6.203484e-23
30	8125512	7935337	NM_152309	PIK3AP1	0.815307	3.460900e-26	1.799010e-21	5.996701e-23
31	8125512	8114010	NM_002198	IRF1	0.814277	4.481085e-26	2.329313e-21	7.513912e-23
32	8180061	8114010	NM_002198	IRF1	0.814277	4.481085e-26	2.329313e-21	7.279102e-23
33	8178867	8114010	NM_002198	IRF1	0.814277	4.481085e-26	2.329313e-21	7.058523e-23
34	8180061	7958828	NM_001143906	TRAFD1	0.800105	1.343117e-24	6.981655e-20	2.053428e-21
35	8178867	7958828	NM_001143906	TRAFD1	0.800105	1.343117e-24	6.981655e-20	1.994759e-21
36	8125512	7958828	NM_001143906	TRAFD1	0.800105	1.343117e-24	6.981655e-20	1.939349e-21
37	8178867	8107934	AF086145	C5orf56	0.798461	1.958013e-24	1.017795e-19	2.750797e-21
38	8180061	8107934	AF086145	C5orf56	0.798461	1.958013e-24	1.017795e-19	2.678407e-21
39	8125512	8107934	AF086145	C5orf56	0.798461	1.958013e-24	1.017795e-19	2.609730e-21
40	8125512	7917576	NM_052942	GBP5	0.794494	4.791733e-24	2.490791e-19	6.226977e-21
41	8180061	7917576	NM_052942	GBP5	0.794494	4.791733e-24	2.490791e-19	6.075100e-21
42	8178867	7917576	NM_052942	GBP5	0.794494	4.791733e-24	2.490791e-19	5.930454e-21
43	8125512	8072710	NM_030641	APOL6	0.788938	1.624550e-23	8.444572e-19	1.963854e-20
44	8180061	8072710	NM_030641	APOL6	0.788938	1.624550e-23	8.444572e-19	1.919221e-20
45	8178867	8072710	NM_030641	APOL6	0.788938	1.624550e-23	8.444572e-19	1.876572e-20
46	8180061	8007446	NM_005533	IFI35	0.777621	1.750179e-22	9.097605e-18	1.977740e-19
47	8178867	8007446	NM_005533	IFI35	0.777621	1.750179e-22	9.097605e-18	1.935661e-19
48	8125512	8007446	NM_005533	IFI35	0.777621	1.750179e-22	9.097605e-18	1.895334e-19
49	8180061	7917532	NM_004120	GBP2	0.777086	1.951430e-22	1.014373e-17	2.070149e-19
50	8178867	7917532	NM_004120	GBP2	0.777086	1.951430e-22	1.014373e-17	2.028746e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation