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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 13886.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13886 8178841 NM_018833 TAP2 link to infopage transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)

Fetching correlation data, please wait...
Getting list of correlations for id 13886.
Getting list of p-values for id 13886.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178841 8180034 NM_000544 TAP2 link to infopage 0.995845 5.098870e-109 8.834812e-105 8.834812e-105
2 8178841 8125483 NM_000544 TAP2 link to infopage 0.986133 3.625284e-82 6.281530e-78 3.140765e-78
3 8178841 8180061 NM_000593 TAP1 link to infopage 0.856307 2.533583e-31 4.389940e-27 1.463313e-27
4 8178841 8125512 NM_000593 TAP1 link to infopage 0.856307 2.533583e-31 4.389940e-27 1.097485e-27
5 8178841 8178867 NM_000593 TAP1 link to infopage 0.856307 2.533583e-31 4.389940e-27 8.779880e-28
6 8178841 7958828 NM_001143906 TRAFD1 link to infopage 0.775640 2.615660e-22 4.532155e-18 7.553591e-19
7 8178841 7964119 NM_005419 STAT2 link to infopage 0.770307 7.561450e-22 1.310172e-17 1.871675e-18
8 8178841 8117760 NM_001098479 HLA-F link to infopage 0.757784 8.205539e-21 1.421774e-16 1.777217e-17
9 8178841 8119198 NM_015050 FTSJD2 link to infopage 0.754761 1.427856e-20 2.474046e-16 2.748940e-17
10 8178841 8179019 NM_018950 HLA-F link to infopage 0.746267 6.493053e-20 1.125051e-15 1.125051e-16
11 8178841 8010426 NM_020954 RNF213 link to infopage 0.744504 8.825144e-20 1.529133e-15 1.390121e-16
12 8178841 8177717 NM_018950 HLA-F link to infopage 0.735837 3.849005e-19 6.669171e-15 5.557642e-16
13 8178841 7917516 NM_002053 GBP1 link to infopage 0.734401 4.885476e-19 8.465065e-15 6.511588e-16
14 8178841 7973618 NM_006084 IRF9 link to infopage 0.722330 3.418060e-18 5.922472e-14 4.230337e-15
15 8178841 8114010 NM_002198 IRF1 link to infopage 0.720936 4.250836e-18 7.365424e-14 4.910283e-15
16 8178841 8007446 NM_005533 IFI35 link to infopage 0.713700 1.291153e-17 2.237181e-13 1.398238e-14
17 8178841 8072710 NM_030641 APOL6 link to infopage 0.713486 1.333568e-17 2.310673e-13 1.359220e-14
18 8178841 8086125 NM_014831 TRANK1 link to infopage 0.705343 4.467831e-17 7.741410e-13 4.300783e-14
19 8178841 8107934 AF086145 C5orf56 link to infopage 0.702317 6.929422e-17 1.200661e-12 6.319268e-14
20 8178841 8136388 NM_018295 TMEM140 link to infopage 0.696723 1.537528e-16 2.664074e-12 1.332037e-13
21 8178841 8010454 NM_020914 RNF213 link to infopage 0.695788 1.753490e-16 3.038272e-12 1.446796e-13
22 8178841 7935337 NM_152309 PIK3AP1 link to infopage 0.695754 1.761974e-16 3.052972e-12 1.387715e-13
23 8178841 7917532 NM_004120 GBP2 link to infopage 0.693907 2.280870e-16 3.952064e-12 1.718289e-13
24 8178841 8072735 NM_145343 APOL1 link to infopage 0.686185 6.573437e-16 1.138980e-11 4.745748e-13
25 8178841 8117458 NM_001145009 BTN3A1 link to infopage 0.682004 1.150417e-15 1.993327e-11 7.973309e-13
26 8178841 8057744 NM_007315 STAT1 link to infopage 0.677539 2.070176e-15 3.586994e-11 1.379613e-12
27 8178841 8075720 NM_030882 APOL2 link to infopage 0.677454 2.093360e-15 3.627164e-11 1.343394e-12
28 8178841 8117890 NM_005516 HLA-E link to infopage 0.672910 3.765504e-15 6.524489e-11 2.330175e-12
29 8178841 7911600 NM_023018 NADK link to infopage 0.672061 4.197523e-15 7.273048e-11 2.507948e-12
30 8178841 8027862 NM_005306 FFAR2 link to infopage 0.671090 4.750186e-15 8.230648e-11 2.743549e-12
31 8178841 8179103 NM_005516 HLA-E link to infopage 0.670826 4.912717e-15 8.512264e-11 2.745892e-12
32 8178841 8177788 NM_005516 HLA-E link to infopage 0.670826 4.912717e-15 8.512264e-11 2.660083e-12
33 8178841 8158560 NM_014506 TOR1B link to infopage 0.668337 6.729951e-15 1.166099e-10 3.533632e-12
34 8178841 7917576 NM_052942 GBP5 link to infopage 0.662632 1.369042e-14 2.372138e-10 6.976877e-12
35 8178841 7995926 NM_032206 NLRC5 link to infopage 0.662569 1.379757e-14 2.390706e-10 6.830587e-12
36 8178841 8178489 link to infopage 0.661031 1.666420e-14 2.887406e-10 8.020573e-12
37 8178841 8016980 hsa-mir-142 link to infopage 0.660683 1.738821e-14 3.012854e-10 8.142850e-12
38 8178841 8122457 NM_003764 STX11 link to infopage 0.659519 2.003945e-14 3.472236e-10 9.137464e-12
39 8178841 7984217 NM_025201 PLEKHO2 link to infopage 0.658966 2.143351e-14 3.713784e-10 9.522524e-12
40 8178841 8007992 NM_002265 KPNB1 link to infopage 0.657822 2.461834e-14 4.265620e-10 1.066405e-11
41 8178841 8066905 NM_021035 ZNFX1 link to infopage 0.656483 2.893267e-14 5.013163e-10 1.222723e-11
42 8178841 7917561 NM_052941 GBP4 link to infopage 0.656029 3.055609e-14 5.294454e-10 1.260584e-11
43 8178841 8090018 NM_031458 PARP9 link to infopage 0.654036 3.878412e-14 6.720125e-10 1.562820e-11
44 8178841 8117800 NM_002116 HLA-A link to infopage 0.653056 4.357918e-14 7.550964e-10 1.716128e-11
45 8178841 8145490 NM_173174 PTK2B link to infopage 0.652870 4.455415e-14 7.719898e-10 1.715533e-11
46 8178841 7917530 AL832451 link to infopage 0.652784 4.500869e-14 7.798656e-10 1.695360e-11
47 8178841 8082100 NM_017554 PARP14 link to infopage 0.651331 5.345124e-14 9.261497e-10 1.970531e-11
48 8178841 7977046 NM_006291 TNFAIP2 link to infopage 0.649798 6.401651e-14 1.109214e-9 2.310863e-11
49 8178841 8127778 NM_017633 FAM46A link to infopage 0.646016 9.945707e-14 1.723293e-9 3.516924e-11
50 8178841 8061966 NM_016732 RALY link to infopage 0.643544 1.322121e-13 2.290838e-9 4.581677e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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