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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16904.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16904 8125512 NM_000593 TAP1 link to infopage transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

Fetching correlation data, please wait...
Getting list of correlations for id 16904.
Getting list of p-values for id 16904.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8125512 8178867 NM_000593 TAP1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8125512 8180061 NM_000593 TAP1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8125512 8125483 NM_000544 TAP2 link to infopage 0.867483 5.266897e-33 9.125952e-29 3.041984e-29
4 8125512 8178841 NM_018833 TAP2 link to infopage 0.856307 2.533583e-31 4.389940e-27 1.097485e-27
5 8125512 8180034 NM_000544 TAP2 link to infopage 0.850371 1.739384e-30 3.013830e-26 6.027660e-27
6 8125512 7917516 NM_002053 GBP1 link to infopage 0.841772 2.456664e-29 4.256662e-25 7.094436e-26
7 8125512 7964119 NM_005419 STAT2 link to infopage 0.825462 2.476567e-27 4.291147e-23 6.130210e-24
8 8125512 8057744 NM_007315 STAT1 link to infopage 0.823160 4.570119e-27 7.918645e-23 9.898307e-24
9 8125512 8010426 NM_020954 RNF213 link to infopage 0.816387 2.635028e-26 4.565713e-22 5.073014e-23
10 8125512 7935337 NM_152309 PIK3AP1 link to infopage 0.815307 3.460900e-26 5.996701e-22 5.996701e-23
11 8125512 8114010 NM_002198 IRF1 link to infopage 0.814277 4.481085e-26 7.764376e-22 7.058523e-23
12 8125512 7958828 NM_001143906 TRAFD1 link to infopage 0.800105 1.343117e-24 2.327218e-20 1.939349e-21
13 8125512 8107934 AF086145 C5orf56 link to infopage 0.798461 1.958013e-24 3.392649e-20 2.609730e-21
14 8125512 7917576 NM_052942 GBP5 link to infopage 0.794494 4.791733e-24 8.302636e-20 5.930454e-21
15 8125512 8072710 NM_030641 APOL6 link to infopage 0.788938 1.624550e-23 2.814857e-19 1.876572e-20
16 8125512 8007446 NM_005533 IFI35 link to infopage 0.777621 1.750179e-22 3.032535e-18 1.895334e-19
17 8125512 7917532 NM_004120 GBP2 link to infopage 0.777086 1.951430e-22 3.381243e-18 1.988967e-19
18 8125512 7973618 NM_006084 IRF9 link to infopage 0.766850 1.482100e-21 2.568034e-17 1.426686e-18
19 8125512 8117760 NM_001098479 HLA-F link to infopage 0.760087 5.350335e-21 9.270525e-17 4.879224e-18
20 8125512 8179019 NM_018950 HLA-F link to infopage 0.751524 2.561552e-20 4.438401e-16 2.219200e-17
21 8125512 8119198 NM_015050 FTSJD2 link to infopage 0.750111 3.296620e-20 5.712054e-16 2.720026e-17
22 8125512 8086125 NM_014831 TRANK1 link to infopage 0.748625 4.290397e-20 7.433971e-16 3.379078e-17
23 8125512 8177717 NM_018950 HLA-F link to infopage 0.740486 1.759476e-19 3.048645e-15 1.325498e-16
24 8125512 8090018 NM_031458 PARP9 link to infopage 0.738699 2.382065e-19 4.127403e-15 1.719751e-16
25 8125512 8023043 NM_024430 PSTPIP2 link to infopage 0.738257 2.566280e-19 4.446594e-15 1.778637e-16
26 8125512 7917561 NM_052941 GBP4 link to infopage 0.736679 3.344507e-19 5.795028e-15 2.228857e-16
27 8125512 8066905 NM_021035 ZNFX1 link to infopage 0.734899 4.498961e-19 7.795350e-15 2.887167e-16
28 8125512 8094259 NM_015907 LAP3 link to infopage 0.734803 4.570739e-19 7.919719e-15 2.828471e-16
29 8125512 8059361 NM_020830 WDFY1 link to infopage 0.729431 1.102210e-18 1.909799e-14 6.585515e-16
30 8125512 8010454 NM_020914 RNF213 link to infopage 0.729321 1.122057e-18 1.944188e-14 6.480627e-16
31 8125512 8158560 NM_014506 TOR1B link to infopage 0.727395 1.530267e-18 2.651494e-14 8.553205e-16
32 8125512 7973564 NM_176783 PSME1 link to infopage 0.724240 2.529649e-18 4.383123e-14 1.369726e-15
33 8125512 8072735 NM_145343 APOL1 link to infopage 0.723619 2.790306e-18 4.834764e-14 1.465080e-15
34 8125512 8082100 NM_017554 PARP14 link to infopage 0.723390 2.893219e-18 5.013081e-14 1.474435e-15
35 8125512 8154233 NM_014143 CD274 link to infopage 0.723153 3.003202e-18 5.203647e-14 1.486756e-15
36 8125512 8056285 NM_022168 IFIH1 link to infopage 0.721915 3.647549e-18 6.320109e-14 1.755586e-15
37 8125512 7995926 NM_032206 NLRC5 link to infopage 0.720226 4.747878e-18 8.226648e-14 2.223418e-15
38 8125512 7948274 NM_004223 UBE2L6 link to infopage 0.715428 9.933696e-18 1.721211e-13 4.529504e-15
39 8125512 8122457 NM_003764 STX11 link to infopage 0.713370 1.357133e-17 2.351503e-13 6.029496e-15
40 8125512 8075720 NM_030882 APOL2 link to infopage 0.712518 1.543100e-17 2.673730e-13 6.684325e-15
41 8125512 7917530 AL832451 link to infopage 0.708351 2.872464e-17 4.977119e-13 1.213931e-14
42 8125512 8082075 NM_138287 DTX3L link to infopage 0.706057 4.024902e-17 6.973947e-13 1.660464e-14
43 8125512 7921434 NM_004833 AIM2 link to infopage 0.705157 4.591030e-17 7.954877e-13 1.849971e-14
44 8125512 7905047 NM_000566 FCGR1A link to infopage 0.703440 5.891662e-17 1.020848e-12 2.320110e-14
45 8125512 7981290 NM_004184 WARS link to infopage 0.701757 7.510967e-17 1.301425e-12 2.892056e-14
46 8125512 8019486 NM_003004 SECTM1 link to infopage 0.699308 1.066335e-16 1.847638e-12 4.016604e-14
47 8125512 7919133 NM_001017986 FCGR1B link to infopage 0.699293 1.068562e-16 1.851498e-12 3.939357e-14
48 8125512 7905060 NM_000566 FCGR1A link to infopage 0.696694 1.543778e-16 2.674904e-12 5.572716e-14
49 8125512 7983512 NM_021199 SQRDL link to infopage 0.696668 1.549403e-16 2.684651e-12 5.478880e-14
50 8125512 8117458 NM_001145009 BTN3A1 link to infopage 0.692012 2.966241e-16 5.139605e-12 1.027921e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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