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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 6926.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6926 8178225 NM_006979 SLC39A7 link to infopage solute carrier family 39 (zinc transporter), member 7

Fetching correlation data, please wait...
Getting list of correlations for id 6926.
Getting list of p-values for id 6926.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178225 8179525 NM_006979 SLC39A7 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8178225 8118613 NM_006979 SLC39A7 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8178225 7994267 NM_001145545 C16orf82 link to infopage -0.771205 6.336205e-22 1.097874e-17 3.659581e-18
4 8178225 7953021 NM_024551 ADIPOR2 link to infopage 0.755620 1.220782e-20 2.115248e-16 5.288120e-17
5 8178225 8134552 NM_005720 ARPC1B link to infopage 0.750108 3.298193e-20 5.714779e-16 1.142956e-16
6 8178225 8116020 NM_006816 LMAN2 link to infopage 0.744360 9.048159e-20 1.567774e-15 2.612957e-16
7 8178225 8030049 NM_017457 CYTH2 link to infopage 0.733344 5.817909e-19 1.008069e-14 1.440099e-15
8 8178225 8138773 NM_022170 EIF4H link to infopage 0.732284 6.924773e-19 1.199855e-14 1.499819e-15
9 8178225 7911619 NM_002074 GNB1 link to infopage 0.725241 2.158197e-18 3.739508e-14 4.155009e-15
10 8178225 8167790 NM_058163 TSR2 link to infopage 0.722529 3.312816e-18 5.740117e-14 5.740117e-15
11 8178225 8133434 NM_022170 EIF4H link to infopage 0.722490 3.333210e-18 5.775453e-14 5.250412e-15
12 8178225 8064218 NM_012469 PRPF6 link to infopage 0.713621 1.306641e-17 2.264016e-13 1.886680e-14
13 8178225 7964466 NM_006400 DCTN2 link to infopage 0.713466 1.337672e-17 2.317784e-13 1.782911e-14
14 8178225 8072206 NM_005243 EWSR1 link to infopage 0.708946 2.630435e-17 4.557755e-13 3.255539e-14
15 8178225 8122705 NM_005389 PCMT1 link to infopage 0.707941 3.051810e-17 5.287872e-13 3.525248e-14
16 8178225 8028524 NM_004924 ACTN4 link to infopage 0.707334 3.336968e-17 5.781964e-13 3.613728e-14
17 8178225 8115849 link to infopage -0.707081 3.463762e-17 6.001660e-13 3.530389e-14
18 8178225 8160914 NM_007126 VCP link to infopage 0.705067 4.651750e-17 8.060088e-13 4.477826e-14
19 8178225 8104449 NM_012073 CCT5 link to infopage 0.704179 5.292723e-17 9.170701e-13 4.826685e-14
20 8178225 8099340 NM_017491 WDR1 link to infopage 0.701454 7.845016e-17 1.359306e-12 6.796529e-14
21 8178225 8132580 NM_006555 YKT6 link to infopage 0.699638 1.017368e-16 1.762794e-12 8.394259e-14
22 8178225 7980523 NM_015859 GTF2A1 link to infopage 0.696683 1.546112e-16 2.678948e-12 1.217704e-13
23 8178225 8175052 NM_001130847 AIFM1 link to infopage 0.695584 1.804470e-16 3.126606e-12 1.359394e-13
24 8178225 7965480 NM_002629 PGAM1 link to infopage 0.692179 2.898875e-16 5.022880e-12 2.092867e-13
25 8178225 7933164 NM_004966 HNRNPF link to infopage 0.691039 3.392553e-16 5.878276e-12 2.351310e-13
26 8178225 7997264 NM_001906 CTRB1 link to infopage -0.689988 3.918959e-16 6.790380e-12 2.611684e-13
27 8178225 8137330 ENST00000356058 link to infopage -0.689362 4.269499e-16 7.397761e-12 2.739912e-13
28 8178225 8064522 NM_174856 IDH3B link to infopage 0.689194 4.368693e-16 7.569634e-12 2.703441e-13
29 8178225 8110894 NM_017755 NSUN2 link to infopage 0.686143 6.611433e-16 1.145563e-11 3.950217e-13
30 8178225 8169659 NM_004541 NDUFA1 link to infopage 0.685970 6.766971e-16 1.172513e-11 3.908377e-13
31 8178225 8172876 NM_006306 SMC1A link to infopage 0.685377 7.329658e-16 1.270010e-11 4.096806e-13
32 8178225 8089729 NM_001015887 IGSF11 link to infopage -0.684164 8.626188e-16 1.494660e-11 4.670811e-13
33 8178225 8064502 NM_003091 SNRPB link to infopage 0.683815 9.037709e-16 1.565964e-11 4.745345e-13
34 8178225 7919564 ENST00000365297 link to infopage -0.683542 9.373420e-16 1.624132e-11 4.776860e-13
35 8178225 8132592 NM_002541 OGDH link to infopage 0.682310 1.104662e-15 1.914048e-11 5.468710e-13
36 8178225 8110821 NM_001044 SLC6A3 link to infopage -0.682111 1.134159e-15 1.965157e-11 5.458769e-13
37 8178225 8058458 ENST00000327138 link to infopage -0.682026 1.147084e-15 1.987552e-11 5.371762e-13
38 8178225 8067409 NM_005560 LAMA5 link to infopage -0.682016 1.148544e-15 1.990082e-11 5.237057e-13
39 8178225 8006690 NM_012138 AATF link to infopage 0.681878 1.169767e-15 2.026854e-11 5.197063e-13
40 8178225 7929624 NM_002629 PGAM1 link to infopage 0.681493 1.231135e-15 2.133188e-11 5.332969e-13
41 8178225 7901611 ENST00000361350 link to infopage -0.681170 1.284848e-15 2.226257e-11 5.429894e-13
42 8178225 7982531 NM_006305 ANP32A link to infopage 0.680732 1.361439e-15 2.358965e-11 5.616583e-13
43 8178225 7986960 NM_015307 FAM189A1 link to infopage -0.680645 1.377229e-15 2.386324e-11 5.549591e-13
44 8178225 7958152 NM_002629 PGAM1 link to infopage 0.680594 1.386459e-15 2.402317e-11 5.459812e-13
45 8178225 7999233 NM_032569 GLYR1 link to infopage 0.680159 1.468421e-15 2.544333e-11 5.654073e-13
46 8178225 7923659 NM_032833 PPP1R15B link to infopage 0.679921 1.515031e-15 2.625094e-11 5.706727e-13
47 8178225 7990211 NM_000520 HEXA link to infopage 0.677510 2.077971e-15 3.600500e-11 7.660638e-13
48 8178225 7995069 NM_004960 FUS link to infopage 0.676857 2.262393e-15 3.920048e-11 8.166767e-13
49 8178225 8164562 NM_199350 C9orf50 link to infopage -0.676856 2.262854e-15 3.920847e-11 8.001728e-13
50 8178225 7977657 NM_031314 HNRNPC link to infopage 0.675466 2.710038e-15 4.695684e-11 9.391367e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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