[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14166	8072577	NM_003405	YWHAH		tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 14166.
Getting list of p-values for id 14166.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8072577	7928444	NM_014000	VCL	0.799576	1.516823e-24	2.628200e-20	2.628200e-20
2	8072577	8019250	NM_000918	P4HB	0.771662	5.789873e-22	1.003211e-17	5.016057e-18
3	8072577	7954997	NM_001025356	ANO6	0.768900	9.958881e-22	1.725575e-17	5.751918e-18
4	8072577	8019762			0.766030	1.735740e-21	3.007517e-17	7.518792e-18
5	8072577	8099340	NM_017491	WDR1	0.760263	5.177227e-21	8.970582e-17	1.794116e-17
6	8072577	7911619	NM_002074	GNB1	0.757574	8.529156e-21	1.477847e-16	2.463078e-17
7	8072577	7966135	NM_014325	CORO1C	0.755161	1.327605e-20	2.300341e-16	3.286201e-17
8	8072577	7940869	NM_178443	FERMT3	0.751251	2.689450e-20	4.660010e-16	5.825012e-17
9	8072577	8044333	NM_004987	LIMS1	0.738906	2.300244e-19	3.985633e-15	4.428481e-16
10	8072577	8054519	NM_004987	LIMS1	0.738906	2.300244e-19	3.985633e-15	3.985633e-16
11	8072577	8090490	NM_002950	RPN1	0.737596	2.867975e-19	4.969340e-15	4.517582e-16
12	8072577	7987172	NM_020154	C15orf24	0.727077	1.610324e-18	2.790208e-14	2.325173e-15
13	8072577	7938154	NM_004517	ILK	0.725100	2.207245e-18	3.824493e-14	2.941918e-15
14	8072577	8160914	NM_007126	VCP	0.724183	2.552490e-18	4.422699e-14	3.159071e-15
15	8072577	7964466	NM_006400	DCTN2	0.723415	2.881551e-18	4.992864e-14	3.328576e-15
16	8072577	7944285	NM_001655	ARCN1	0.722855	3.147470e-18	5.453621e-14	3.408513e-15
17	8072577	8143132	NM_001128619	LUZP6	0.721936	3.635865e-18	6.299864e-14	3.705802e-15
18	8072577	7896882	NM_001130413	SCNN1D	-0.718490	6.212012e-18	1.076355e-13	5.979752e-15
19	8072577	7980463	NM_012245	SNW1	0.718250	6.446690e-18	1.117018e-13	5.879042e-15
20	8072577	8094704	NM_005339	UBE2K	0.717590	7.135851e-18	1.236429e-13	6.182145e-15
21	8072577	8139706	NM_014302	SEC61G	0.716430	8.524668e-18	1.477069e-13	7.033663e-15
22	8072577	8151625	AF495523	REXO1L1	-0.713459	1.338997e-17	2.320079e-13	1.054582e-14
23	8072577	8151621	AF495523	REXO1L1	-0.713459	1.338997e-17	2.320079e-13	1.008730e-14
24	8072577	8151617	AF495523	REXO1L1	-0.713459	1.338997e-17	2.320079e-13	9.666997e-15
25	8072577	8151613	AF495523	REXO1L1	-0.713459	1.338997e-17	2.320079e-13	9.280317e-15
26	8072577	8151605	AF495523	REXO1L1	-0.713459	1.338997e-17	2.320079e-13	8.923382e-15
27	8072577	7920515	NM_017582	UBE2Q1	0.712357	1.580849e-17	2.739137e-13	1.014495e-14
28	8072577	8091048	NR_023350	COPB2	0.710160	2.196227e-17	3.805402e-13	1.359072e-14
29	8072577	7927513	NM_015262	FAM21C	0.708520	2.801589e-17	4.854314e-13	1.673901e-14
30	8072577	7998414	ENST00000428636		-0.706484	3.780832e-17	6.551048e-13	2.183683e-14
31	8072577	8006392	NM_002815	PSMD11	0.706405	3.825213e-17	6.627947e-13	2.138047e-14
32	8072577	8115168	NM_018047	RBM22	0.705166	4.584854e-17	7.944177e-13	2.482555e-14
33	8072577	8059177	NM_006000	TUBA4A	0.703202	6.098521e-17	1.056691e-12	3.202093e-14
34	8072577	8110894	NM_017755	NSUN2	0.702766	6.494362e-17	1.125278e-12	3.309641e-14
35	8072577	8119067	NM_173562	KCTD20	0.701170	8.171667e-17	1.415905e-12	4.045442e-14
36	8072577	7932966	NM_033666	ITGB1	0.700698	8.743192e-17	1.514933e-12	4.208147e-14
37	8072577	8039796	NM_014453	CHMP2A	0.700062	9.575693e-17	1.659180e-12	4.484271e-14
38	8072577	7965480	NM_002629	PGAM1	0.699675	1.011948e-16	1.753402e-12	4.614215e-14
39	8072577	8104449	NM_012073	CCT5	0.699482	1.040219e-16	1.802388e-12	4.621507e-14
40	8072577	8021301	NM_004163	RAB27B	0.699098	1.098612e-16	1.903566e-12	4.758914e-14
41	8072577	8058428	NM_005006	NDUFS1	0.698359	1.220105e-16	2.114076e-12	5.156283e-14
42	8072577	7959282	NM_194271	RNF34	0.697584	1.361593e-16	2.359232e-12	5.617219e-14
43	8072577	8061772	NM_012325	MAPRE1	0.696772	1.527049e-16	2.645917e-12	6.153296e-14
44	8072577	8098291	NM_173872	CLCN3	0.695482	1.830258e-16	3.171288e-12	7.207473e-14
45	8072577	8066668	NM_020967	NCOA5	0.694294	2.160952e-16	3.744282e-12	8.320626e-14
46	8072577	7929624	NM_002629	PGAM1	0.693949	2.267564e-16	3.929008e-12	8.541322e-14
47	8072577	8086028	NM_000404	GLB1	0.692633	2.722349e-16	4.717014e-12	1.003620e-13
48	8072577	8078738	NM_005109	OXSR1	0.692516	2.766568e-16	4.793632e-12	9.986733e-14
49	8072577	8115849			-0.691807	3.051769e-16	5.287801e-12	1.079143e-13
50	8072577	7958152	NM_002629	PGAM1	0.691667	3.110975e-16	5.390386e-12	1.078077e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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