[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16179	8044333	NM_004987	LIMS1		LIM and senescent cell antigen-like domains 1
16180	8054519	NM_004987	LIMS1		LIM and senescent cell antigen-like domains 1
16392	8044258	NM_004987	LIMS1		LIM and senescent cell antigen-like domains 1

Fetching correlation data, please wait...
Getting list of correlations for id 16179.
Getting list of p-values for id 16179.
1 of 3 done.
Getting list of correlations for id 16180.
Getting list of p-values for id 16180.
2 of 3 done.
Getting list of correlations for id 16392.
Getting list of p-values for id 16392.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.286 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8044333	8054519	NM_004987	LIMS1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8054519	8044333	NM_004987	LIMS1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8054519	8135378	NM_002736	PRKAR2B	0.879312	5.830915e-35	3.030968e-30	1.010323e-30
4	8044333	8135378	NM_002736	PRKAR2B	0.879312	5.830915e-35	3.030968e-30	7.577419e-31
5	8054519	7954997	NM_001025356	ANO6	0.853077	7.303317e-31	3.796337e-26	7.592675e-27
6	8044333	7954997	NM_001025356	ANO6	0.853077	7.303317e-31	3.796337e-26	6.327229e-27
7	8054519	7928444	NM_014000	VCL	0.839355	5.026832e-29	2.612998e-24	3.732854e-25
8	8044333	7928444	NM_014000	VCL	0.839355	5.026832e-29	2.612998e-24	3.266247e-25
9	8054519	8123744	NM_000129	F13A1	0.819566	1.168505e-26	6.074008e-22	6.748898e-23
10	8044333	8123744	NM_000129	F13A1	0.819566	1.168505e-26	6.074008e-22	6.074008e-23
11	8054519	8112274	NM_024930	ELOVL7	0.793544	5.919158e-24	3.076838e-19	2.797125e-20
12	8044333	8112274	NM_024930	ELOVL7	0.793544	5.919158e-24	3.076838e-19	2.564031e-20
13	8054519	8120833	NM_031469	SH3BGRL2	0.788395	1.826967e-23	9.496759e-19	7.305199e-20
14	8044333	8120833	NM_031469	SH3BGRL2	0.788395	1.826967e-23	9.496759e-19	6.783399e-20
15	8044333	8021301	NM_004163	RAB27B	0.787875	2.043370e-23	1.062164e-18	7.081095e-20
16	8054519	8021301	NM_004163	RAB27B	0.787875	2.043370e-23	1.062164e-18	6.638527e-20
17	8054519	8115327	NM_003118	SPARC	0.784909	3.849500e-23	2.001009e-18	1.177064e-19
18	8044333	8115327	NM_003118	SPARC	0.784909	3.849500e-23	2.001009e-18	1.111671e-19
19	8044333	8102532	NM_001083	PDE5A	0.781710	7.536646e-23	3.917624e-18	2.061907e-19
20	8054519	8102532	NM_001083	PDE5A	0.781710	7.536646e-23	3.917624e-18	1.958812e-19
21	8044333	8169617	NM_006667	PGRMC1	0.775614	2.629471e-22	1.366826e-17	6.508693e-19
22	8054519	8169617	NM_006667	PGRMC1	0.775614	2.629471e-22	1.366826e-17	6.212843e-19
23	8044258	8135378	NM_002736	PRKAR2B	0.767282	1.363595e-21	7.088102e-17	3.081784e-18
24	8054519	8063716	NM_030773	TUBB1	0.765143	2.057911e-21	1.069723e-16	4.457179e-18
25	8044333	8063716	NM_030773	TUBB1	0.765143	2.057911e-21	1.069723e-16	4.278892e-18
26	8044333	8044258	NM_004987	LIMS1	0.764898	2.156498e-21	1.120969e-16	4.311421e-18
27	8044258	8044333	NM_004987	LIMS1	0.764898	2.156498e-21	1.120969e-16	4.151738e-18
28	8054519	8044258	NM_004987	LIMS1	0.764898	2.156498e-21	1.120969e-16	4.003462e-18
29	8044258	8054519	NM_004987	LIMS1	0.764898	2.156498e-21	1.120969e-16	3.865412e-18
30	8044333	8007931	NM_000212	ITGB3	0.764122	2.500367e-21	1.299716e-16	4.332385e-18
31	8054519	8007931	NM_000212	ITGB3	0.764122	2.500367e-21	1.299716e-16	4.192631e-18
32	8054519	8098291	NM_173872	CLCN3	0.754678	1.449667e-20	7.535514e-16	2.354848e-17
33	8044333	8098291	NM_173872	CLCN3	0.754678	1.449667e-20	7.535514e-16	2.283489e-17
34	8044333	8083656	NM_022736	MFSD1	0.742824	1.179553e-19	6.131435e-15	1.803363e-16
35	8054519	8083656	NM_022736	MFSD1	0.742824	1.179553e-19	6.131435e-15	1.751838e-16
36	8044333	8016832	NM_012329	MMD	0.739275	2.161102e-19	1.123362e-14	3.120451e-16
37	8054519	8016832	NM_012329	MMD	0.739275	2.161102e-19	1.123362e-14	3.036115e-16
38	8044333	8072577	NM_003405	YWHAH	0.738906	2.300244e-19	1.195690e-14	3.146552e-16
39	8054519	8072577	NM_003405	YWHAH	0.738906	2.300244e-19	1.195690e-14	3.065872e-16
40	8054519	8105523	NM_004520	KIF2A	0.738168	2.605190e-19	1.354204e-14	3.385510e-16
41	8044333	8105523	NM_004520	KIF2A	0.738168	2.605190e-19	1.354204e-14	3.302937e-16
42	8054519	8073194	NM_004810	GRAP2	0.734674	4.669544e-19	2.427276e-14	5.779228e-16
43	8044333	8073194	NM_004810	GRAP2	0.734674	4.669544e-19	2.427276e-14	5.644828e-16
44	8044258	8102532	NM_001083	PDE5A	0.729332	1.119963e-18	5.821680e-14	1.323109e-15
45	8044333	7922200	NM_003005	SELP	0.723237	2.963738e-18	1.540581e-13	3.423513e-15
46	8054519	7922200	NM_003005	SELP	0.723237	2.963738e-18	1.540581e-13	3.349089e-15
47	8044333	8110499	NM_025158	RUFY1	0.710409	2.116139e-17	1.099990e-12	2.340404e-14
48	8054519	8110499	NM_025158	RUFY1	0.710409	2.116139e-17	1.099990e-12	2.291646e-14
49	8054519	8111772	NM_001343	DAB2	0.708439	2.835270e-17	1.473802e-12	3.007759e-14
50	8044333	8111772	NM_001343	DAB2	0.708439	2.835270e-17	1.473802e-12	2.947603e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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