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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
9775 7896882 NM_001130413 SCNN1D link to infopage sodium channel, nonvoltage-gated 1, delta

Fetching correlation data, please wait...
Getting list of correlations for id 9775.
Getting list of p-values for id 9775.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.173 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7896882 7991939 NM_145294 WDR90 link to infopage 0.869554 2.471640e-33 4.282611e-29 4.282611e-29
2 7896882 8131087 NM_001080461 UNCX link to infopage 0.845930 6.966380e-30 1.207065e-25 6.035324e-26
3 7896882 8137330 ENST00000356058 link to infopage 0.834563 2.008060e-28 3.479365e-24 1.159788e-24
4 7896882 8159036 NM_139025 ADAMTS13 link to infopage 0.830985 5.487785e-28 9.508685e-24 2.377171e-24
5 7896882 8024306 NM_005883 APC2 link to infopage 0.828585 1.063548e-27 1.842810e-23 3.685619e-24
6 7896882 8132070 NM_002047 GARS link to infopage -0.822635 5.248694e-27 9.094412e-23 1.515735e-23
7 7896882 8139883 M69012 LOC346329 link to infopage 0.821515 7.041002e-27 1.219994e-22 1.742849e-23
8 7896882 8091048 NR_023350 COPB2 link to infopage -0.821300 7.449170e-27 1.290718e-22 1.613397e-23
9 7896882 7944285 NM_001655 ARCN1 link to infopage -0.821028 7.996494e-27 1.385553e-22 1.539503e-23
10 7896882 8056959 NM_001080458 EVX2 link to infopage 0.820416 9.375678e-27 1.624524e-22 1.624524e-23
11 7896882 8060604 NM_000915 OXT link to infopage 0.818829 1.413007e-26 2.448318e-22 2.225744e-23
12 7896882 8056041 link to infopage 0.818401 1.576868e-26 2.732239e-22 2.276866e-23
13 7896882 8013259 ENST00000300983 link to infopage 0.814662 4.069355e-26 7.050972e-22 5.423825e-23
14 7896882 7980463 NM_012245 SNW1 link to infopage -0.814552 4.183120e-26 7.248092e-22 5.177209e-23
15 7896882 7992758 NM_172229 KREMEN2 link to infopage 0.812811 6.456360e-26 1.118694e-21 7.457957e-23
16 7896882 8110169 NM_014613 FAF2 link to infopage -0.811301 9.370739e-26 1.623668e-21 1.014792e-22
17 7896882 8151621 AF495523 REXO1L1 link to infopage 0.810700 1.086114e-25 1.881910e-21 1.107006e-22
18 7896882 8151613 AF495523 REXO1L1 link to infopage 0.810700 1.086114e-25 1.881910e-21 1.045505e-22
19 7896882 8151617 AF495523 REXO1L1 link to infopage 0.810700 1.086114e-25 1.881910e-21 9.904789e-23
20 7896882 8151625 AF495523 REXO1L1 link to infopage 0.810700 1.086114e-25 1.881910e-21 9.409549e-23
21 7896882 8151605 AF495523 REXO1L1 link to infopage 0.810700 1.086114e-25 1.881910e-21 8.961476e-23
22 7896882 8146243 NM_032410 HOOK3 link to infopage -0.807877 2.155177e-25 3.734276e-21 1.697398e-22
23 7896882 8148517 NM_001702 BAI1 link to infopage 0.807566 2.322727e-25 4.024589e-21 1.749821e-22
24 7896882 8046276 NM_001003845 SP5 link to infopage 0.807341 2.451439e-25 4.247608e-21 1.769837e-22
25 7896882 8094704 NM_005339 UBE2K link to infopage -0.805281 4.007748e-25 6.944226e-21 2.777690e-22
26 7896882 7906197 NM_021817 HAPLN2 link to infopage 0.805273 4.015731e-25 6.958058e-21 2.676176e-22
27 7896882 7898556 NM_001040125 PQLC2 link to infopage 0.804682 4.618195e-25 8.001947e-21 2.963684e-22
28 7896882 8003939 NM_003963 TM4SF5 link to infopage 0.804634 4.670897e-25 8.093264e-21 2.890451e-22
29 7896882 7978718 NM_006364 SEC23A link to infopage -0.804490 4.833023e-25 8.374180e-21 2.887648e-22
30 7896882 8031084 NM_031895 CACNG8 link to infopage 0.802973 6.902763e-25 1.196042e-20 3.986806e-22
31 7896882 8078738 NM_005109 OXSR1 link to infopage -0.802736 7.296721e-25 1.264303e-20 4.078396e-22
32 7896882 8053728 NM_000798 DRD5 link to infopage 0.802718 7.326402e-25 1.269446e-20 3.967018e-22
33 7896882 8074063 NM_024866 ADM2 link to infopage 0.801029 1.085274e-24 1.880455e-20 5.698348e-22
34 7896882 7969372 ENST00000362412 link to infopage 0.800221 1.307911e-24 2.266217e-20 6.665343e-22
35 7896882 7909127 NM_181644 MFSD4 link to infopage 0.800049 1.360699e-24 2.357684e-20 6.736239e-22
36 7896882 8021199 NM_002747 MAPK4 link to infopage 0.799987 1.380341e-24 2.391717e-20 6.643659e-22
37 7896882 7938331 NM_003442 ZNF143 link to infopage -0.799217 1.647005e-24 2.853765e-20 7.712880e-22
38 7896882 7969093 NM_001507 MLNR link to infopage 0.798848 1.792229e-24 3.105396e-20 8.172095e-22
39 7896882 8074131 NM_001080420 SHANK3 link to infopage 0.798541 1.922545e-24 3.331193e-20 8.541520e-22
40 7896882 7980523 NM_015859 GTF2A1 link to infopage -0.798127 2.112571e-24 3.660452e-20 9.151129e-22
41 7896882 8040618 NM_016131 RAB10 link to infopage -0.797169 2.626125e-24 4.550286e-20 1.109826e-21
42 7896882 7992460 NM_001099456 NPW link to infopage 0.796109 3.335998e-24 5.780284e-20 1.376258e-21
43 7896882 8048551 NM_005876 SPEG link to infopage 0.796096 3.346241e-24 5.798032e-20 1.348380e-21
44 7896882 8148703 NM_198572 SPATC1 link to infopage 0.795826 3.555638e-24 6.160854e-20 1.400194e-21
45 7896882 8067409 NM_005560 LAMA5 link to infopage 0.795574 3.763007e-24 6.520162e-20 1.448925e-21
46 7896882 8039504 NM_001145176 SHISA7 link to infopage 0.794765 4.510015e-24 7.814504e-20 1.698805e-21
47 7896882 7970546 NM_152726 EFHA1 link to infopage -0.794340 4.958850e-24 8.592200e-20 1.828128e-21
48 7896882 8072941 NM_003614 GALR3 link to infopage 0.794164 5.157492e-24 8.936387e-20 1.861747e-21
49 7896882 7959282 NM_194271 RNF34 link to infopage -0.794129 5.197468e-24 9.005653e-20 1.837888e-21
50 7896882 7918955 NM_001135589 GDAP2 link to infopage -0.794062 5.275509e-24 9.140874e-20 1.828175e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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