[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15624	7993371	NM_001004067	NOMO3		NODAL modulator 3
15625	7993511	NM_001004067	NOMO3		NODAL modulator 3
15626	7999791	NM_001004067	NOMO3		NODAL modulator 3

Fetching correlation data, please wait...
Getting list of correlations for id 15624.
Getting list of p-values for id 15624.
1 of 3 done.
Getting list of correlations for id 15625.
Getting list of p-values for id 15625.
2 of 3 done.
Getting list of correlations for id 15626.
Getting list of p-values for id 15626.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.296 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999791	7993371	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7999791	7993511	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7993371	7993511	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7993371	7999791	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7993511	7999791	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	7993511	7993371	NM_001004067	NOMO3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	7993371	8019250	NM_000918	P4HB	0.808646	1.789979e-25	9.304488e-21	1.329213e-21
8	7999791	8019250	NM_000918	P4HB	0.808646	1.789979e-25	9.304488e-21	1.163061e-21
9	7993511	8019250	NM_000918	P4HB	0.808646	1.789979e-25	9.304488e-21	1.033832e-21
10	7993511	7958644	NM_170665	ATP2A2	0.791781	8.737800e-24	4.541996e-19	4.541996e-20
11	7993371	7958644	NM_170665	ATP2A2	0.791781	8.737800e-24	4.541996e-19	4.129087e-20
12	7999791	7958644	NM_170665	ATP2A2	0.791781	8.737800e-24	4.541996e-19	3.784997e-20
13	7999791	7952557	NM_003139	SRPR	0.790553	1.143439e-23	5.943711e-19	4.572085e-20
14	7993371	7952557	NM_003139	SRPR	0.790553	1.143439e-23	5.943711e-19	4.245508e-20
15	7993511	7952557	NM_003139	SRPR	0.790553	1.143439e-23	5.943711e-19	3.962474e-20
16	7993511	7960594	NM_001273	CHD4	0.784271	4.404816e-23	2.289667e-18	1.431042e-19
17	7999791	7960594	NM_001273	CHD4	0.784271	4.404816e-23	2.289667e-18	1.346863e-19
18	7993371	7960594	NM_001273	CHD4	0.784271	4.404816e-23	2.289667e-18	1.272037e-19
19	7993511	7976876	NM_001376	DYNC1H1	0.783476	5.208356e-23	2.707355e-18	1.424924e-19
20	7993371	7976876	NM_001376	DYNC1H1	0.783476	5.208356e-23	2.707355e-18	1.353678e-19
21	7999791	7976876	NM_001376	DYNC1H1	0.783476	5.208356e-23	2.707355e-18	1.289217e-19
22	7999791	8160914	NM_007126	VCP	0.773001	4.439387e-22	2.307638e-17	1.048926e-18
23	7993511	8160914	NM_007126	VCP	0.773001	4.439387e-22	2.307638e-17	1.003321e-18
24	7993371	8160914	NM_007126	VCP	0.773001	4.439387e-22	2.307638e-17	9.615156e-19
25	7993511	8146142	NM_178819	AGPAT6	0.771369	6.134346e-22	3.188694e-17	1.275478e-18
26	7999791	8146142	NM_178819	AGPAT6	0.771369	6.134346e-22	3.188694e-17	1.226421e-18
27	7993371	8146142	NM_178819	AGPAT6	0.771369	6.134346e-22	3.188694e-17	1.180998e-18
28	7993371	8132592	NM_002541	OGDH	0.771086	6.487537e-22	3.372286e-17	1.204388e-18
29	7999791	8132592	NM_002541	OGDH	0.771086	6.487537e-22	3.372286e-17	1.162857e-18
30	7993511	8132592	NM_002541	OGDH	0.771086	6.487537e-22	3.372286e-17	1.124095e-18
31	7993511	8158783	NM_005085	NUP214	0.767501	1.306857e-21	6.793176e-17	2.191347e-18
32	7999791	8158783	NM_005085	NUP214	0.767501	1.306857e-21	6.793176e-17	2.122867e-18
33	7993371	8158783	NM_005085	NUP214	0.767501	1.306857e-21	6.793176e-17	2.058538e-18
34	7993371	8053909	NM_014014	SNRNP200	0.765919	1.773339e-21	9.217992e-17	2.711174e-18
35	7993511	8053909	NM_014014	SNRNP200	0.765919	1.773339e-21	9.217992e-17	2.633712e-18
36	7999791	8053909	NM_014014	SNRNP200	0.765919	1.773339e-21	9.217992e-17	2.560553e-18
37	7999791	7955908	NM_005337	NCKAP1L	0.762901	3.152705e-21	1.638807e-16	4.429209e-18
38	7993511	7955908	NM_005337	NCKAP1L	0.762901	3.152705e-21	1.638807e-16	4.312651e-18
39	7993371	7955908	NM_005337	NCKAP1L	0.762901	3.152705e-21	1.638807e-16	4.202070e-18
40	7993511	8164883	NM_033161	SURF4	0.762454	3.430512e-21	1.783214e-16	4.458036e-18
41	7993371	8164883	NM_033161	SURF4	0.762454	3.430512e-21	1.783214e-16	4.349304e-18
42	7999791	8164883	NM_033161	SURF4	0.762454	3.430512e-21	1.783214e-16	4.245749e-18
43	7993511	8005903	NM_003170	SUPT6H	0.761964	3.762796e-21	1.955939e-16	4.548695e-18
44	7999791	8005903	NM_003170	SUPT6H	0.761964	3.762796e-21	1.955939e-16	4.445315e-18
45	7993371	8005903	NM_003170	SUPT6H	0.761964	3.762796e-21	1.955939e-16	4.346531e-18
46	7993511	8072206	NM_005243	EWSR1	0.761573	4.050576e-21	2.105530e-16	4.577239e-18
47	7993371	8072206	NM_005243	EWSR1	0.761573	4.050576e-21	2.105530e-16	4.479851e-18
48	7999791	8072206	NM_005243	EWSR1	0.761573	4.050576e-21	2.105530e-16	4.386521e-18
49	7993511	8099340	NM_017491	WDR1	0.755278	1.299405e-20	6.754437e-16	1.378457e-17
50	7993371	8099340	NM_017491	WDR1	0.755278	1.299405e-20	6.754437e-16	1.350887e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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