[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16599	7904881	NR_002305	PDIA3P		protein disulfide isomerase family A, member 3 pseudogene

Fetching correlation data, please wait...
Getting list of correlations for id 16599.
Getting list of p-values for id 16599.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.189 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7904881	7983274	NM_005313	PDIA3	0.992959	2.978362e-97	5.160608e-93	5.160608e-93
2	7904881	8101376	NM_014933	SEC31A	0.893815	1.167718e-37	2.023305e-33	1.011652e-33
3	7904881	8062880	NM_003404	YWHAB	0.871609	1.151963e-33	1.996006e-29	6.653352e-30
4	7904881	7934852	NM_005271	GLUD1	0.869156	2.861821e-33	4.958677e-29	1.239669e-29
5	7904881	7939242	NM_005898	CAPRIN1	0.869083	2.939265e-33	5.092865e-29	1.018573e-29
6	7904881	8050278	NM_005742	PDIA6	0.864095	1.767188e-32	3.062006e-28	5.103343e-29
7	7904881	8163275	NM_001080398	KIAA0368	0.861972	3.711286e-32	6.430546e-28	9.186494e-29
8	7904881	8110522	NM_001746	CANX	0.861593	4.231704e-32	7.332274e-28	9.165342e-29
9	7904881	8062349	NM_002951	RPN2	0.859099	9.934413e-32	1.721336e-27	1.912595e-28
10	7904881	7944285	NM_001655	ARCN1	0.859032	1.016127e-31	1.760644e-27	1.760644e-28
11	7904881	8163882	NM_016322	RAB14	0.858341	1.283465e-31	2.223860e-27	2.021691e-28
12	7904881	7930956	NM_007190	SEC23IP	0.858272	1.313596e-31	2.276067e-27	1.896723e-28
13	7904881	8132070	NM_002047	GARS	0.857893	1.492064e-31	2.585300e-27	1.988692e-28
14	7904881	8126018	NM_007271	STK38	0.855319	3.512721e-31	6.086491e-27	4.347493e-28
15	7904881	7999562	NM_002582	PARN	0.853658	6.049797e-31	1.048248e-26	6.988322e-28
16	7904881	7987325	NM_014691	AQR	0.853044	7.382608e-31	1.279185e-26	7.994903e-28
17	7904881	8001211	NM_030790	ITFG1	0.852771	8.065113e-31	1.397442e-26	8.220248e-28
18	7904881	7907135	NM_199344	SFT2D2	0.852492	8.824647e-31	1.529047e-26	8.494703e-28
19	7904881	7903369	NM_133496	SLC30A7	0.850702	1.566013e-30	2.713430e-26	1.428121e-27
20	7904881	8152782	NM_014846	KIAA0196	0.850010	1.950675e-30	3.379935e-26	1.689968e-27
21	7904881	8083282	NM_032383	HPS3	0.849387	2.374893e-30	4.114977e-26	1.959513e-27
22	7904881	8023195	NM_005901	SMAD2	0.849199	2.519940e-30	4.366299e-26	1.984682e-27
23	7904881	8087951	NM_018165	PBRM1	0.848812	2.845681e-30	4.930711e-26	2.143787e-27
24	7904881	8068289	NM_138927	SON	0.848167	3.482873e-30	6.034775e-26	2.514489e-27
25	7904881	8041179	NM_024692	CLIP4	0.848128	3.525894e-30	6.109317e-26	2.443727e-27
26	7904881	7958130	NM_003299	HSP90B1	0.847412	4.406657e-30	7.635414e-26	2.936698e-27
27	7904881	8080991	NM_194247	HNRNPA3	0.845549	7.833262e-30	1.357269e-25	5.026923e-27
28	7904881	8046590	NM_194247	HNRNPA3	0.845323	8.394886e-30	1.454582e-25	5.194935e-27
29	7904881	7943176	NM_004268	MED17	0.844799	9.851364e-30	1.706946e-25	5.886020e-27
30	7904881	8100251	NM_015030	FRYL	0.844287	1.151334e-29	1.994917e-25	6.649724e-27
31	7904881	8017776	NM_014877	HELZ	0.843868	1.307558e-29	2.265606e-25	7.308407e-27
32	7904881	8171516	NM_002893	RBBP7	0.843229	1.586466e-29	2.748870e-25	8.590217e-27
33	7904881	7944991	NM_152713	STT3A	0.843221	1.590012e-29	2.755013e-25	8.348525e-27
34	7904881	8051670	NM_005633	SOS1	0.842378	2.048837e-29	3.550019e-25	1.044123e-26
35	7904881	7978718	NM_006364	SEC23A	0.842130	2.207205e-29	3.824424e-25	1.092693e-26
36	7904881	8101043	NM_203505	G3BP2	0.841457	2.698498e-29	4.675687e-25	1.298802e-26
37	7904881	8018315	NM_006937	SUMO2	0.841434	2.717103e-29	4.707924e-25	1.272412e-26
38	7904881	8148333	NM_015137	EFR3A	0.841163	2.945828e-29	5.104235e-25	1.343220e-26
39	7904881	8103106	NM_006726	LRBA	0.840930	3.156489e-29	5.469248e-25	1.402371e-26
40	7904881	7924351	NM_004446	EPRS	0.840858	3.224759e-29	5.587539e-25	1.396885e-26
41	7904881	7930498	NM_016234	ACSL5	0.840775	3.305514e-29	5.727464e-25	1.396942e-26
42	7904881	8042335	NM_003375	VDAC2	0.840765	3.315462e-29	5.744702e-25	1.367786e-26
43	7904881	7936614	NM_003750	EIF3A	0.840117	4.015411e-29	6.957502e-25	1.618024e-26
44	7904881	7921583	NM_001098398	COPA	0.839717	4.518043e-29	7.828414e-25	1.779185e-26
45	7904881	7955908	NM_005337	NCKAP1L	0.838345	6.756077e-29	1.170625e-24	2.601390e-26
46	7904881	7909898	NM_198551	MIA3	0.837156	9.543625e-29	1.653624e-24	3.594835e-26
47	7904881	8001149	NM_018206	VPS35	0.836565	1.131839e-28	1.961138e-24	4.172634e-26
48	7904881	8123767	NM_003144	SSR1	0.836340	1.207785e-28	2.092729e-24	4.359851e-26
49	7904881	8025429	NM_005968	HNRNPM	0.835272	1.640590e-28	2.842651e-24	5.801329e-26
50	7904881	8135576	NM_015641	TES	0.834676	1.944255e-28	3.368810e-24	6.737620e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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