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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
16585 8179298 NM_001320 CSNK2B link to infopage casein kinase 2, beta polypeptide
16631 8118218 NM_001320 CSNK2B link to infopage casein kinase 2, beta polypeptide
16739 8178050 NM_001320 CSNK2B link to infopage casein kinase 2, beta polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 16585.
Getting list of p-values for id 16585.
1 of 3 done.
Getting list of correlations for id 16631.
Getting list of p-values for id 16631.
2 of 3 done.
Getting list of correlations for id 16739.
Getting list of p-values for id 16739.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.304 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178050 8118218 NM_001320 CSNK2B link to infopage 0.992840 7.048832e-97 3.664054e-92 3.664054e-92
2 8118218 8178050 NM_001320 CSNK2B link to infopage 0.992840 7.048832e-97 3.664054e-92 1.832027e-92
3 8179298 8118218 NM_001320 CSNK2B link to infopage 0.986810 2.807872e-83 1.459560e-78 4.865199e-79
4 8118218 8179298 NM_001320 CSNK2B link to infopage 0.986810 2.807872e-83 1.459560e-78 3.648899e-79
5 8178050 8179298 NM_001320 CSNK2B link to infopage 0.983865 8.393948e-79 4.363258e-74 8.726517e-75
6 8179298 8178050 NM_001320 CSNK2B link to infopage 0.983865 8.393948e-79 4.363258e-74 7.272097e-75
7 8178050 7913169 NM_004930 CAPZB link to infopage 0.834356 2.129591e-28 1.106983e-23 1.581404e-24
8 8179298 7913169 NM_004930 CAPZB link to infopage 0.826974 1.648423e-27 8.568667e-23 1.071083e-23
9 8118218 7913169 NM_004930 CAPZB link to infopage 0.824177 3.490649e-27 1.814474e-22 2.016082e-23
10 8118218 8009164 NM_005828 DCAF7 link to infopage 0.809172 1.576038e-25 8.192404e-21 8.192404e-22
11 8178050 8009164 NM_005828 DCAF7 link to infopage 0.809002 1.642167e-25 8.536149e-21 7.760135e-22
12 8118218 7964234 NM_001686 ATP5B link to infopage 0.806693 2.862960e-25 1.488195e-20 1.240163e-21
13 8178050 8174636 NM_006937 SUMO2 link to infopage 0.802128 8.409112e-25 4.371140e-20 3.362416e-21
14 8179298 7964234 NM_001686 ATP5B link to infopage 0.801104 1.066627e-24 5.544433e-20 3.960309e-21
15 8178050 8064351 NM_177559 CSNK2A1 link to infopage 0.798970 1.743010e-24 9.060340e-20 6.040227e-21
16 8118218 8064351 NM_177559 CSNK2A1 link to infopage 0.797731 2.311874e-24 1.201735e-19 7.510846e-21
17 8178050 8018315 NM_006937 SUMO2 link to infopage 0.796991 2.734023e-24 1.421173e-19 8.359839e-21
18 8178050 7964234 NM_001686 ATP5B link to infopage 0.796802 2.853296e-24 1.483172e-19 8.239844e-21
19 8179298 8064351 NM_177559 CSNK2A1 link to infopage 0.793123 6.498252e-24 3.377856e-19 1.777819e-20
20 8179298 8009164 NM_005828 DCAF7 link to infopage 0.790766 1.091478e-23 5.673610e-19 2.836805e-20
21 8118218 7914834 NM_002794 PSMB2 link to infopage 0.787745 2.101269e-23 1.092261e-18 5.201242e-20
22 8178050 7914834 NM_002794 PSMB2 link to infopage 0.787708 2.118182e-23 1.101052e-18 5.004784e-20
23 8118218 7925851 NM_014023 WDR37 link to infopage 0.787335 2.295107e-23 1.193020e-18 5.187043e-20
24 8179298 7914834 NM_002794 PSMB2 link to infopage 0.786901 2.518597e-23 1.309192e-18 5.454966e-20
25 8178050 7940486 BC002331 SDHAF2 link to infopage 0.786410 2.797142e-23 1.453982e-18 5.815930e-20
26 8179298 7940486 BC002331 SDHAF2 link to infopage 0.785662 3.280778e-23 1.705381e-18 6.559159e-20
27 8118218 7940486 BC002331 SDHAF2 link to infopage 0.785425 3.450325e-23 1.793513e-18 6.642642e-20
28 8178050 8062349 NM_002951 RPN2 link to infopage 0.784048 4.617279e-23 2.400108e-18 8.571813e-20
29 8118218 8174636 NM_006937 SUMO2 link to infopage 0.782961 5.802849e-23 3.016379e-18 1.040131e-19
30 8118218 8018315 NM_006937 SUMO2 link to infopage 0.782341 6.607655e-23 3.434725e-18 1.144908e-19
31 8179298 8018315 NM_006937 SUMO2 link to infopage 0.781658 7.618477e-23 3.960160e-18 1.277471e-19
32 8178050 7925851 NM_014023 WDR37 link to infopage 0.781562 7.772047e-23 4.039988e-18 1.262496e-19
33 8178050 7949765 NM_001008709 PPP1CA link to infopage 0.781142 8.482209e-23 4.409137e-18 1.336102e-19
34 8179298 7925851 NM_014023 WDR37 link to infopage 0.779113 1.289576e-22 6.703347e-18 1.971573e-19
35 8179298 8174636 NM_006937 SUMO2 link to infopage 0.778276 1.531068e-22 7.958646e-18 2.273899e-19
36 8179298 7949765 NM_001008709 PPP1CA link to infopage 0.778113 1.583079e-22 8.229002e-18 2.285834e-19
37 8178050 7963244 NM_005653 TFCP2 link to infopage 0.777613 1.753077e-22 9.112669e-18 2.462884e-19
38 8178050 8061186 NM_006363 SEC23B link to infopage 0.776491 2.201932e-22 1.144586e-17 3.012069e-19
39 8118218 8147447 NM_014754 PTDSS1 link to infopage 0.775494 2.693639e-22 1.400180e-17 3.590206e-19
40 8118218 7963244 NM_005653 TFCP2 link to infopage 0.774382 3.368621e-22 1.751043e-17 4.377607e-19
41 8118218 7949765 NM_001008709 PPP1CA link to infopage 0.774030 3.614595e-22 1.878903e-17 4.582689e-19
42 8118218 8062349 NM_002951 RPN2 link to infopage 0.774004 3.634010e-22 1.888995e-17 4.497606e-19
43 8178050 8178322 NM_006937 SUMO2 link to infopage 0.773542 3.984997e-22 2.071441e-17 4.817305e-19
44 8178050 8050278 NM_005742 PDIA6 link to infopage 0.773004 4.436816e-22 2.306302e-17 5.241594e-19
45 8178050 7952557 NM_003139 SRPR link to infopage 0.772861 4.564070e-22 2.372449e-17 5.272109e-19
46 8118218 8061186 NM_006363 SEC23B link to infopage 0.772775 4.643369e-22 2.413670e-17 5.247108e-19
47 8178050 8076465 NM_032311 POLDIP3 link to infopage 0.772770 4.647921e-22 2.416036e-17 5.140502e-19
48 8179298 8164883 NM_033161 SURF4 link to infopage 0.772490 4.913904e-22 2.554296e-17 5.321451e-19
49 8178050 8147447 NM_014754 PTDSS1 link to infopage 0.771299 6.220272e-22 3.233360e-17 6.598693e-19
50 8179298 8061186 NM_006363 SEC23B link to infopage 0.771208 6.332964e-22 3.291938e-17 6.583876e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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