[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16585.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16585	8179298	NM_001320	CSNK2B		casein kinase 2, beta polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 16585.
Getting list of p-values for id 16585.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179298	8118218	NM_001320	CSNK2B	0.986810	2.807872e-83	4.865199e-79	4.865199e-79
2	8179298	8178050	NM_001320	CSNK2B	0.983865	8.393948e-79	1.454419e-74	7.272097e-75
3	8179298	7913169	NM_004930	CAPZB	0.826974	1.648423e-27	2.856222e-23	9.520741e-24
4	8179298	7964234	NM_001686	ATP5B	0.801104	1.066627e-24	1.848144e-20	4.620361e-21
5	8179298	8064351	NM_177559	CSNK2A1	0.793123	6.498252e-24	1.125952e-19	2.251904e-20
6	8179298	8009164	NM_005828	DCAF7	0.790766	1.091478e-23	1.891203e-19	3.152005e-20
7	8179298	7914834	NM_002794	PSMB2	0.786901	2.518597e-23	4.363973e-19	6.234247e-20
8	8179298	7940486	BC002331	SDHAF2	0.785662	3.280778e-23	5.684604e-19	7.105756e-20
9	8179298	8018315	NM_006937	SUMO2	0.781658	7.618477e-23	1.320053e-18	1.466726e-19
10	8179298	7925851	NM_014023	WDR37	0.779113	1.289576e-22	2.234449e-18	2.234449e-19
11	8179298	8174636	NM_006937	SUMO2	0.778276	1.531068e-22	2.652882e-18	2.411711e-19
12	8179298	7949765	NM_001008709	PPP1CA	0.778113	1.583079e-22	2.743001e-18	2.285834e-19
13	8179298	8164883	NM_033161	SURF4	0.772490	4.913904e-22	8.514321e-18	6.549478e-19
14	8179298	8061186	NM_006363	SEC23B	0.771208	6.332964e-22	1.097313e-17	7.837948e-19
15	8179298	8050908	NM_000182	HADHA	0.770074	7.915904e-22	1.371589e-17	9.143925e-19
16	8179298	8147447	NM_014754	PTDSS1	0.769075	9.624884e-22	1.667704e-17	1.042315e-18
17	8179298	8062349	NM_002951	RPN2	0.768798	1.015914e-21	1.760274e-17	1.035455e-18
18	8179298	7906703	NM_004550	NDUFS2	0.766964	1.450081e-21	2.512556e-17	1.395865e-18
19	8179298	7952557	NM_003139	SRPR	0.766592	1.557936e-21	2.699436e-17	1.420756e-18
20	8179298	8050278	NM_005742	PDIA6	0.766170	1.689664e-21	2.927681e-17	1.463840e-18
21	8179298	7963244	NM_005653	TFCP2	0.762324	3.516287e-21	6.092670e-17	2.901272e-18
22	8179298	7993680	BC050464	C16orf62	0.761163	4.374313e-21	7.579372e-17	3.445169e-18
23	8179298	8006392	NM_002815	PSMD11	0.758874	6.706488e-21	1.162033e-16	5.052318e-18
24	8179298	7899504	NM_006582	GMEB1	0.758531	7.145688e-21	1.238133e-16	5.158889e-18
25	8179298	8077652	NM_005718	ARPC4	0.758040	7.825764e-21	1.355970e-16	5.423881e-18
26	8179298	8175360	NM_173470	MMGT1	0.757817	8.155766e-21	1.413150e-16	5.435191e-18
27	8179298	8160914	NM_007126	VCP	0.754556	1.482097e-20	2.568029e-16	9.511218e-18
28	8179298	8157283	NM_004697	PRPF4	0.753129	1.919062e-20	3.325159e-16	1.187557e-17
29	8179298	8076465	NM_032311	POLDIP3	0.752151	2.288901e-20	3.965978e-16	1.367579e-17
30	8179298	8178322	NM_006937	SUMO2	0.752052	2.330016e-20	4.037219e-16	1.345740e-17
31	8179298	7955908	NM_005337	NCKAP1L	0.751151	2.737978e-20	4.744094e-16	1.530353e-17
32	8179298	7966427	NM_006768	BRAP	0.750323	3.174160e-20	5.499867e-16	1.718708e-17
33	8179298	7915504	NM_022821	ELOVL1	0.750029	3.344898e-20	5.795705e-16	1.756274e-17
34	8179298	8163784	NM_012164	FBXW2	0.749025	3.997197e-20	6.925943e-16	2.037042e-17
35	8179298	8086028	NM_000404	GLB1	0.744959	8.155052e-20	1.413026e-15	4.037217e-17
36	8179298	8117888	NM_006325	RAN	0.744822	8.350833e-20	1.446949e-15	4.019302e-17
37	8179298	8048847	NM_001135187	AGFG1	0.743232	1.099522e-19	1.905142e-15	5.149033e-17
38	8179298	8152628	NM_024295	DERL1	0.743147	1.115755e-19	1.933269e-15	5.087551e-17
39	8179298	8101376	NM_014933	SEC31A	0.742257	1.300230e-19	2.252908e-15	5.776687e-17
40	8179298	7993185	NM_002484	NUBP1	0.742086	1.338802e-19	2.319742e-15	5.799355e-17
41	8179298	7961489	NM_016312	WBP11	0.741879	1.387273e-19	2.403728e-15	5.862752e-17
42	8179298	7990211	NM_000520	HEXA	0.740966	1.621347e-19	2.809308e-15	6.688828e-17
43	8179298	8096489	NM_006457	PDLIM5	0.740850	1.653913e-19	2.865735e-15	6.664501e-17
44	8179298	7920317	NM_004515	ILF2	0.740129	1.869792e-19	3.239789e-15	7.363156e-17
45	8179298	8082478	NM_016128	COPG	0.739884	1.949270e-19	3.377500e-15	7.505554e-17
46	8179298	8136849	NM_001143679	GSTK1	0.739836	1.965204e-19	3.405108e-15	7.402409e-17
47	8179298	7900119	NM_005119	THRAP3	0.739545	2.064425e-19	3.577030e-15	7.610701e-17
48	8179298	8068974	NM_003274	TRAPPC10	0.739272	2.162035e-19	3.746157e-15	7.804494e-17
49	8179298	7905700	NM_014847	UBAP2L	0.738733	2.368314e-19	4.103577e-15	8.374647e-17
50	8179298	7987172	NM_020154	C15orf24	0.738606	2.419772e-19	4.192740e-15	8.385479e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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