[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7295	8102848	NM_030648	SETD7		SET domain containing (lysine methyltransferase) 7

Fetching correlation data, please wait...
Getting list of correlations for id 7295.
Getting list of p-values for id 7295.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8102848	8099631	ENST00000421246		0.772363	5.038946e-22	8.730982e-18	8.730982e-18
2	8102848	8086028	NM_000404	GLB1	0.759982	5.456629e-21	9.454702e-17	4.727351e-17
3	8102848	8110522	NM_001746	CANX	0.756323	1.073384e-20	1.859853e-16	6.199509e-17
4	8102848	8115524	NM_014666	CLINT1	0.752708	2.070648e-20	3.587812e-16	8.969531e-17
5	8102848	8054092	NM_015348	TMEM131	0.744590	8.695249e-20	1.506626e-15	3.013252e-16
6	8102848	7921583	NM_001098398	COPA	0.744181	9.333523e-20	1.617220e-15	2.695366e-16
7	8102848	7966135	NM_014325	CORO1C	0.743753	1.005075e-19	1.741494e-15	2.487848e-16
8	8102848	8106252	NM_000521	HEXB	0.743214	1.103006e-19	1.911178e-15	2.388972e-16
9	8102848	7903803	NM_006621	AHCYL1	0.740852	1.653384e-19	2.864818e-15	3.183132e-16
10	8102848	8042468	NM_001153	ANXA4	0.737559	2.885785e-19	5.000199e-15	5.000199e-16
11	8102848	7927513	NM_015262	FAM21C	0.735098	4.352673e-19	7.541876e-15	6.856251e-16
12	8102848	8107005	NM_001750	CAST	0.734250	5.009292e-19	8.679600e-15	7.233000e-16
13	8102848	7964701	NM_002076	GNS	0.733794	5.401567e-19	9.359295e-15	7.199458e-16
14	8102848	8115168	NM_018047	RBM22	0.733283	5.876294e-19	1.018185e-14	7.272753e-16
15	8102848	7983663	NM_005154	USP8	0.732386	6.809627e-19	1.179904e-14	7.866027e-16
16	8102848	8070933	NM_006657	FTCD	-0.729188	1.146362e-18	1.986302e-14	1.241439e-15
17	8102848	8091048	NR_023350	COPB2	0.727629	1.473701e-18	2.553483e-14	1.502049e-15
18	8102848	8078479	NM_013374	PDCD6IP	0.727437	1.520050e-18	2.633790e-14	1.463217e-15
19	8102848	7927323	NM_018232	FAM21B	0.726456	1.778540e-18	3.081677e-14	1.621935e-15
20	8102848	7927560	NM_001005751	FAM21A	0.726345	1.810286e-18	3.136682e-14	1.568341e-15
21	8102848	8083656	NM_022736	MFSD1	0.726300	1.823198e-18	3.159056e-14	1.504312e-15
22	8102848	7897416	NM_001080397	SLC45A1	-0.725987	1.916699e-18	3.321065e-14	1.509575e-15
23	8102848	7905099	NM_007259	VPS45	0.725163	2.185204e-18	3.786304e-14	1.646219e-15
24	8102848	7898328	NM_001114600	C1orf144	0.724212	2.540661e-18	4.402204e-14	1.834252e-15
25	8102848	8110169	NM_014613	FAF2	0.723486	2.849608e-18	4.937516e-14	1.975006e-15
26	8102848	7969204	NM_052950	WDFY2	0.723381	2.897266e-18	5.020093e-14	1.930805e-15
27	8102848	8104449	NM_012073	CCT5	0.722942	3.104430e-18	5.379045e-14	1.992239e-15
28	8102848	7907773	NM_015602	TOR1AIP1	0.721775	3.728582e-18	6.460514e-14	2.307326e-15
29	8102848	7914296	NM_001020658	PUM1	0.720524	4.532161e-18	7.852876e-14	2.707888e-15
30	8102848	7957806	NM_017988	SCYL2	0.720436	4.594948e-18	7.961666e-14	2.653889e-15
31	8102848	7931728	NM_015155	LARP4B	0.718878	5.850890e-18	1.013784e-13	3.270270e-15
32	8102848	8093112	NM_015562	UBXN7	0.718620	6.089235e-18	1.055082e-13	3.297130e-15
33	8102848	7997230	NM_002811	PSMD7	0.718593	6.114434e-18	1.059448e-13	3.210448e-15
34	8102848	8102619	NM_001154	ANXA5	0.718577	6.129360e-18	1.062034e-13	3.123630e-15
35	8102848	7934367	NM_004034	ANXA7	0.716049	9.036258e-18	1.565712e-13	4.473464e-15
36	8102848	8090490	NM_002950	RPN1	0.715631	9.631368e-18	1.668827e-13	4.635631e-15
37	8102848	8082788	NM_001134422	CDV3	0.715405	9.969102e-18	1.727346e-13	4.668503e-15
38	8102848	8045289	NM_012249	RHOQ	0.715324	1.009293e-17	1.748802e-13	4.602112e-15
39	8102848	8024605	NM_021938	CELF5	-0.715047	1.052666e-17	1.823954e-13	4.676804e-15
40	8102848	7927233	NM_015262	FAM21C	0.714345	1.171163e-17	2.029273e-13	5.073183e-15
41	8102848	7913450	NM_005529	HSPG2	-0.714230	1.191737e-17	2.064922e-13	5.036396e-15
42	8102848	8160622	NM_018225	SMU1	0.714032	1.227872e-17	2.127534e-13	5.065557e-15
43	8102848	8093826	NM_000683	ADRA2C	-0.713813	1.269353e-17	2.199408e-13	5.114902e-15
44	8102848	8162833	NM_015051	ERP44	0.713599	1.311087e-17	2.271720e-13	5.162999e-15
45	8102848	8079392	NM_001123396	CCR2	0.713572	1.316487e-17	2.281078e-13	5.069062e-15
46	8102848	7987869	NM_015497	TMEM87A	0.712881	1.461022e-17	2.531513e-13	5.503288e-15
47	8102848	8145894	NM_004674	ASH2L	0.712754	1.489299e-17	2.580509e-13	5.490444e-15
48	8102848	8005328	NM_016239	MYO15A	-0.711612	1.768062e-17	3.063521e-13	6.382335e-15
49	8102848	7936614	NM_003750	EIF3A	0.711548	1.785007e-17	3.092882e-13	6.312004e-15
50	8102848	7950731	NM_199418	PRCP	0.710882	1.972142e-17	3.417131e-13	6.834262e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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