[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14912.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14912	7927560	NM_001005751	FAM21A		family with sequence similarity 21, member A

Fetching correlation data, please wait...
Getting list of correlations for id 14912.
Getting list of p-values for id 14912.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.115 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7927560	7927323	NM_018232	FAM21B	0.988291	6.299142e-86	1.091452e-81	1.091452e-81
2	7927560	7927233	NM_015262	FAM21C	0.979481	1.785593e-73	3.093897e-69	1.546948e-69
3	7927560	7927513	NM_015262	FAM21C	0.894696	7.780366e-38	1.348104e-33	4.493680e-34
4	7927560	8017776	NM_014877	HELZ	0.834488	2.050918e-28	3.553625e-24	8.884062e-25
5	7927560	8093112	NM_015562	UBXN7	0.831386	4.908795e-28	8.505469e-24	1.701094e-24
6	7927560	8091048	NR_023350	COPB2	0.829480	8.320781e-28	1.441742e-23	2.402903e-24
7	7927560	8072206	NM_005243	EWSR1	0.820766	8.560269e-27	1.483238e-22	2.118911e-23
8	7927560	8116622	NM_003804	RIPK1	0.819510	1.185540e-26	2.054185e-22	2.567731e-23
9	7927560	8100902	NM_032217	ANKRD17	0.816616	2.486616e-26	4.308559e-22	4.787288e-23
10	7927560	7955908	NM_005337	NCKAP1L	0.815204	3.552260e-26	6.155000e-22	6.155000e-23
11	7927560	8079021	NM_001904	CTNNB1	0.813867	4.964640e-26	8.602232e-22	7.820211e-23
12	7927560	7920766	NM_018489	ASH1L	0.813648	5.244048e-26	9.086362e-22	7.571968e-23
13	7927560	7913300	NM_016287	HP1BP3	0.812796	6.479434e-26	1.122691e-21	8.636088e-23
14	7927560	8093826	NM_000683	ADRA2C	-0.811678	8.542381e-26	1.480138e-21	1.057242e-22
15	7927560	8003758	NM_000430	PAFAH1B1	0.806663	2.883552e-25	4.996330e-21	3.330887e-22
16	7927560	8138670	NM_031243	HNRNPA2B1	0.804785	4.507150e-25	7.809539e-21	4.880962e-22
17	7927560	7977693	NM_020920	CHD8	0.804315	5.035778e-25	8.725493e-21	5.132643e-22
18	7927560	8160914	NM_007126	VCP	0.804113	5.282262e-25	9.152575e-21	5.084764e-22
19	7927560	8050719	NM_006277	ITSN2	0.803801	5.684835e-25	9.850113e-21	5.184270e-22
20	7927560	8083282	NM_032383	HPS3	0.803244	6.477991e-25	1.122442e-20	5.612208e-22
21	7927560	8108510	NM_020690	ANKHD1-EIF4EBP3	0.803091	6.715353e-25	1.163569e-20	5.540806e-22
22	7927560	7944850	NM_032811	TBRG1	0.803019	6.828422e-25	1.183161e-20	5.378003e-22
23	7927560	8163275	NM_001080398	KIAA0368	0.801970	8.723578e-25	1.511534e-20	6.571888e-22
24	7927560	7988286	NM_025137	SPG11	0.801444	9.858206e-25	1.708131e-20	7.117214e-22
25	7927560	8054888	NM_015282	CLASP1	0.801162	1.052228e-24	1.823196e-20	7.292785e-22
26	7927560	8062492	NM_020336	RALGAPB	0.800991	1.094736e-24	1.896850e-20	7.295576e-22
27	7927560	7980271	NM_033116	NEK9	0.800766	1.153346e-24	1.998403e-20	7.401491e-22
28	7927560	7999841	NM_015092	SMG1	0.800055	1.358778e-24	2.354354e-20	8.408408e-22
29	7927560	7989516	NM_003922	HERC1	0.799536	1.530909e-24	2.652607e-20	9.146920e-22
30	7927560	7936614	NM_003750	EIF3A	0.799152	1.671870e-24	2.896849e-20	9.656163e-22
31	7927560	8001693	NM_016284	CNOT1	0.798500	1.940346e-24	3.362038e-20	1.084528e-21
32	7927560	7930956	NM_007190	SEC23IP	0.797765	2.293891e-24	3.974625e-20	1.242070e-21
33	7927560	8073214	NM_001024843	TNRC6B	0.797486	2.444172e-24	4.235017e-20	1.283339e-21
34	7927560	8054092	NM_015348	TMEM131	0.796862	2.815154e-24	4.877818e-20	1.434652e-21
35	7927560	7972069	NM_015057	MYCBP2	0.796688	2.927794e-24	5.072988e-20	1.449425e-21
36	7927560	7931728	NM_015155	LARP4B	0.796594	2.990471e-24	5.181589e-20	1.439330e-21
37	7927560	8115168	NM_018047	RBM22	0.796093	3.348638e-24	5.802186e-20	1.568158e-21
38	7927560	8152148	NM_015902	UBR5	0.795953	3.455501e-24	5.987346e-20	1.575617e-21
39	7927560	8110522	NM_001746	CANX	0.795343	3.962998e-24	6.866687e-20	1.760689e-21
40	7927560	7909898	NM_198551	MIA3	0.793360	6.165994e-24	1.068382e-19	2.670954e-21
41	7927560	8150599	NM_006904	PRKDC	0.793279	6.278010e-24	1.087791e-19	2.653148e-21
42	7927560	8109843	NM_004946	DOCK2	0.792451	7.538595e-24	1.306212e-19	3.110030e-21
43	7927560	8126018	NM_007271	STK38	0.791999	8.328985e-24	1.443163e-19	3.356194e-21
44	7927560	8008201	NM_002507	NGFR	-0.791388	9.524470e-24	1.650305e-19	3.750693e-21
45	7927560	8098512	NM_021942	C4orf41	0.789845	1.334307e-23	2.311954e-19	5.137676e-21
46	7927560	8151842	NM_015496	KIAA1429	0.789361	1.482288e-23	2.568361e-19	5.583393e-21
47	7927560	8110289	NM_022455	NSD1	0.788831	1.662595e-23	2.880778e-19	6.129316e-21
48	7927560	8033462	NM_206833	CTXN1	-0.788786	1.678990e-23	2.909186e-19	6.060803e-21
49	7927560	8079869	NM_005778	RBM5	0.788402	1.824190e-23	3.160774e-19	6.450558e-21
50	7927560	7960594	NM_001273	CHD4	0.788196	1.906808e-23	3.303926e-19	6.607852e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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