[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15257	8140196	NM_001025202	STAG3L2		stromal antigen 3-like 2

Fetching correlation data, please wait...
Getting list of correlations for id 15257.
Getting list of p-values for id 15257.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8140196	8133610	NM_001013739	STAG3L3	0.994537	6.555115e-103	1.135805e-98	1.135805e-98
2	8140196	8139977	NM_001013739	STAG3L3	0.993109	9.877222e-98	1.711426e-93	8.557131e-94
3	8140196	8053909	NM_014014	SNRNP200	0.859450	8.818860e-32	1.528044e-27	5.093480e-28
4	8140196	8174692	NM_145799	SEPT6	0.851745	1.121925e-30	1.943959e-26	4.859898e-27
5	8140196	8178476	NM_004640	BAT1	0.848905	2.763381e-30	4.788110e-26	9.576221e-27
6	8140196	8179750	NM_004640	BAT1	0.846802	5.324857e-30	9.226379e-26	1.537730e-26
7	8140196	8172914	NM_031407	HUWE1	0.846142	6.527803e-30	1.131072e-25	1.615818e-26
8	8140196	8124926	NM_004640	BAT1	0.845194	8.732416e-30	1.513066e-25	1.891332e-26
9	8140196	7944223	NM_005933	MLL	0.839180	5.290655e-29	9.167118e-25	1.018569e-25
10	8140196	7924636	NM_014698	TMEM63A	0.834248	2.196102e-28	3.805185e-24	3.805185e-25
11	8140196	7908732	NM_018085	IPO9	0.829135	9.146520e-28	1.584817e-23	1.440743e-24
12	8140196	8011141	NM_006445	PRPF8	0.826998	1.637789e-27	2.837797e-23	2.364830e-24
13	8140196	8109528	NM_001037332	CYFIP2	0.823462	4.219013e-27	7.310285e-23	5.623296e-24
14	8140196	8128138	NM_014611	MDN1	0.820389	9.442297e-27	1.636067e-22	1.168619e-23
15	8140196	7941702	NM_006328	RBM14	0.820314	9.628691e-27	1.668363e-22	1.112242e-23
16	8140196	8084717	NM_173216	ST6GAL1	0.818857	1.402942e-26	2.430878e-22	1.519299e-23
17	8140196	7941707	NM_006328	RBM14	0.812027	7.837316e-26	1.357972e-21	7.988069e-23
18	8140196	8116297	NM_005520	HNRNPH1	0.810331	1.188482e-25	2.059282e-21	1.144046e-22
19	8140196	7972946	NM_007368	RASA3	0.805803	3.540348e-25	6.134360e-21	3.228611e-22
20	8140196	8133309	NR_027775	PMS2L5	0.804560	4.753208e-25	8.235884e-21	4.117942e-22
21	8140196	7952601	NM_001143820	ETS1	0.802963	6.919799e-25	1.198994e-20	5.709493e-22
22	8140196	8133623	AK130448		0.802536	7.644850e-25	1.324623e-20	6.021015e-22
23	8140196	8139975	AK130448		0.802536	7.644850e-25	1.324623e-20	5.759231e-22
24	8140196	8025498	NR_000011	SNORA70	0.802186	8.295420e-25	1.437347e-20	5.988947e-22
25	8140196	8093685	NM_002111	HTT	0.801345	1.008737e-24	1.747839e-20	6.991358e-22
26	8140196	8068974	NM_003274	TRAPPC10	0.800416	1.250294e-24	2.166385e-20	8.332249e-22
27	8140196	7982154	NR_002824	HERC2P2	0.800368	1.264148e-24	2.190390e-20	8.112554e-22
28	8140196	8000284	NM_015044	GGA2	0.798650	1.875353e-24	3.249424e-20	1.160508e-21
29	8140196	7912086	NM_024654	NOL9	0.795328	3.976331e-24	6.889788e-20	2.375789e-21
30	8140196	7910752	NM_000254	MTR	0.794885	4.390998e-24	7.608281e-20	2.536094e-21
31	8140196	8134470	NM_003496	TRRAP	0.790907	1.058309e-23	1.833732e-19	5.915264e-21
32	8140196	8025697	NM_012218	ILF3	0.789346	1.487078e-23	2.576660e-19	8.052061e-21
33	8140196	8139896	NR_022007	PMS2L4	0.789078	1.576086e-23	2.730883e-19	8.275404e-21
34	8140196	8131263	X58060	SNORD13P2	0.788794	1.676015e-23	2.904031e-19	8.541267e-21
35	8140196	7956166	NM_015292	ESYT1	0.788474	1.795793e-23	3.111570e-19	8.890200e-21
36	8140196	8163023	NM_003640	IKBKAP	0.788097	1.948179e-23	3.375609e-19	9.376693e-21
37	8140196	8133754	NR_023383	PMS2L11	0.787535	2.198435e-23	3.809228e-19	1.029521e-20
38	8140196	8140269	NR_027775	PMS2L5	0.787441	2.243109e-23	3.886634e-19	1.022798e-20
39	8140196	8133531	NR_027775	PMS2L5	0.785243	3.586516e-23	6.214357e-19	1.593425e-20
40	8140196	8140258	NR_027775	PMS2L5	0.784868	3.882652e-23	6.727471e-19	1.681868e-20
41	8140196	7909545	NM_145759	TRAF5	0.784248	4.426659e-23	7.670073e-19	1.870749e-20
42	8140196	8140239	NR_003613	PMS2L1	0.783411	5.279715e-23	9.148161e-19	2.178134e-20
43	8140196	8002729	NR_027264	GLG1	0.782939	5.829619e-23	1.010098e-18	2.349065e-20
44	8140196	8008682	NM_138962	MSI2	0.782349	6.596614e-23	1.142995e-18	2.597716e-20
45	8140196	7997099	NM_012426	SF3B3	0.781429	7.991073e-23	1.384613e-18	3.076918e-20
46	8140196	8085665	NM_015150	RFTN1	0.781012	8.714393e-23	1.509943e-18	3.282485e-20
47	8140196	8170863	NR_000011	SNORA70	0.780432	9.826076e-23	1.702564e-18	3.622477e-20
48	8140196	7987279	NR_027410	GOLGA8B	0.780336	1.002333e-22	1.736743e-18	3.618214e-20
49	8140196	7900235	NM_012090	MACF1	0.779513	1.187735e-22	2.057988e-18	4.199975e-20
50	8140196	8052803	NM_014911	AAK1	0.779432	1.207841e-22	2.092826e-18	4.185651e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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