[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15593	8133531	NR_027775	PMS2L5		postmeiotic segregation increased 2-like 5
15843	8133309	NR_027775	PMS2L5		postmeiotic segregation increased 2-like 5
16002	8140258	NR_027775	PMS2L5		postmeiotic segregation increased 2-like 5
16038	8140269	NR_027775	PMS2L5		postmeiotic segregation increased 2-like 5

Fetching correlation data, please wait...
Getting list of correlations for id 15593.
Getting list of p-values for id 15593.
1 of 4 done.
Getting list of correlations for id 15843.
Getting list of p-values for id 15843.
2 of 4 done.
Getting list of correlations for id 16002.
Getting list of p-values for id 16002.
3 of 4 done.
Getting list of correlations for id 16038.
Getting list of p-values for id 16038.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.414 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8140269	8140280	NR_003614	PMS2L2	0.996551	3.567969e-113	2.472888e-108	2.472888e-108
2	8140258	8140269	NR_027775	PMS2L5	0.996251	2.576642e-111	1.785819e-106	8.929094e-107
3	8140269	8140258	NR_027775	PMS2L5	0.996251	2.576642e-111	1.785819e-106	5.952729e-107
4	8140269	8140239	NR_003613	PMS2L1	0.995930	1.759760e-109	1.219654e-104	3.049136e-105
5	8140258	8140239	NR_003613	PMS2L1	0.993938	1.373655e-100	9.520528e-96	1.904106e-96
6	8140258	8140280	NR_003614	PMS2L2	0.992277	3.438482e-95	2.383143e-90	3.971905e-91
7	8140258	8133531	NR_027775	PMS2L5	0.990217	6.315438e-90	4.377104e-85	6.253006e-86
8	8133531	8140258	NR_027775	PMS2L5	0.990217	6.315438e-90	4.377104e-85	5.471380e-86
9	8140269	8133531	NR_027775	PMS2L5	0.984011	5.262145e-79	3.647088e-74	4.052320e-75
10	8133531	8140269	NR_027775	PMS2L5	0.984011	5.262145e-79	3.647088e-74	3.647088e-75
11	8133531	8133309	NR_027775	PMS2L5	0.983438	3.181568e-78	2.205081e-73	2.004619e-74
12	8133309	8133531	NR_027775	PMS2L5	0.983438	3.181568e-78	2.205081e-73	1.837567e-74
13	8133531	8140280	NR_003614	PMS2L2	0.982745	2.587188e-77	1.793128e-72	1.379329e-73
14	8133531	8140239	NR_003613	PMS2L1	0.980333	2.054153e-74	1.423692e-69	1.016923e-70
15	8133309	8140258	NR_027775	PMS2L5	0.979989	4.972430e-74	3.446292e-69	2.297528e-70
16	8140258	8133309	NR_027775	PMS2L5	0.979989	4.972430e-74	3.446292e-69	2.153932e-70
17	8140269	8133754	NR_023383	PMS2L11	0.977303	3.050230e-71	2.114053e-66	1.243561e-67
18	8133531	8133754	NR_023383	PMS2L11	0.976546	1.621621e-70	1.123913e-65	6.243961e-67
19	8140258	8133754	NR_023383	PMS2L11	0.974837	5.816613e-69	4.031378e-64	2.121778e-65
20	8140269	8133300	NR_003614	PMS2L2	0.970774	1.169251e-65	8.103848e-61	4.051924e-62
21	8133309	8140269	NR_027775	PMS2L5	0.967498	2.560084e-63	1.774343e-58	8.449253e-60
22	8140269	8133309	NR_027775	PMS2L5	0.967498	2.560084e-63	1.774343e-58	8.065196e-60
23	8140258	8139896	NR_022007	PMS2L4	0.966552	1.096893e-62	7.602349e-58	3.305369e-59
24	8140269	8139896	NR_022007	PMS2L4	0.966440	1.297621e-62	8.993550e-58	3.747312e-59
25	8133309	8140239	NR_003613	PMS2L1	0.964690	1.701745e-61	1.179446e-56	4.717783e-58
26	8133531	8139896	NR_022007	PMS2L4	0.962852	2.219285e-60	1.538142e-55	5.915931e-57
27	8140258	8133300	NR_003614	PMS2L2	0.962005	6.929151e-60	4.802456e-55	1.778687e-56
28	8133309	8140280	NR_003614	PMS2L2	0.961500	1.350698e-59	9.361415e-55	3.343362e-56
29	8133309	8133754	NR_023383	PMS2L11	0.951785	1.139339e-54	7.896532e-50	2.722942e-51
30	8133531	8133300	NR_003614	PMS2L2	0.947404	8.983739e-53	6.226450e-48	2.075483e-49
31	8133309	8139896	NR_022007	PMS2L4	0.937801	3.964567e-49	2.747762e-44	8.863750e-46
32	8133309	8133300	NR_003614	PMS2L2	0.901839	2.515332e-39	1.743326e-34	5.447894e-36
33	8133531	8168316	NM_181672	OGT	0.888192	1.437535e-36	9.963268e-32	3.019172e-33
34	8140258	8168316	NM_181672	OGT	0.885367	4.825523e-36	3.344473e-31	9.836686e-33
35	8140269	7972069	NM_015057	MYCBP2	0.882546	1.567265e-35	1.086240e-30	3.103544e-32
36	8140258	8154316	NM_152896	UHRF2	0.882354	1.696075e-35	1.175516e-30	3.265322e-32
37	8140269	8154316	NM_152896	UHRF2	0.882127	1.862172e-35	1.290634e-30	3.488200e-32
38	8140258	7972069	NM_015057	MYCBP2	0.880707	3.324150e-35	2.303902e-30	6.062899e-32
39	8133531	8074925	NR_024448	LOC91316	0.879996	4.430265e-35	3.070528e-30	7.873148e-32
40	8140258	8074925	NR_024448	LOC91316	0.879661	5.068637e-35	3.512971e-30	8.782427e-32
41	8133531	8112558	NR_003504	GUSBL1	0.878432	8.283142e-35	5.740880e-30	1.400215e-31
42	8140258	8112558	NR_003504	GUSBL1	0.876794	1.580804e-34	1.095624e-29	2.608628e-31
43	8133531	8111455	NR_003504	GUSBL1	0.876499	1.773639e-34	1.229274e-29	2.858776e-31
44	8140258	8111455	NR_003504	GUSBL1	0.876388	1.852576e-34	1.283983e-29	2.918143e-31
45	8133531	7972190	NM_022118	RBM26	0.876065	2.101166e-34	1.456276e-29	3.236170e-31
46	8133531	7972069	NM_015057	MYCBP2	0.876064	2.101908e-34	1.456790e-29	3.166935e-31
47	8140269	8041283	NM_016252	BIRC6	0.875659	2.459804e-34	1.704841e-29	3.627321e-31
48	8140269	8168316	NM_181672	OGT	0.874905	3.292373e-34	2.281878e-29	4.753913e-31
49	8133531	8154316	NM_152896	UHRF2	0.874680	3.590722e-34	2.488657e-29	5.078892e-31
50	8140258	7972190	NM_022118	RBM26	0.874460	3.906535e-34	2.707541e-29	5.415083e-31

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation