[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4171	7946180	NM_006458	TRIM3		tripartite motif-containing 3

Fetching correlation data, please wait...
Getting list of correlations for id 4171.
Getting list of p-values for id 4171.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7946180	7973745	NM_005249	FOXG1	0.709121	2.562800e-17	4.440564e-13	4.440564e-13
2	7946180	7947744	NM_002334	LRP4	0.694841	2.002067e-16	3.468981e-12	1.734491e-12
3	7946180	7935553	NM_032211	LOXL4	0.685366	7.340934e-16	1.271964e-11	4.239879e-12
4	7946180	8029458	NM_001039213	CEACAM16	0.683673	9.211103e-16	1.596008e-11	3.990020e-12
5	7946180	7896822	NM_198576	AGRN	0.681283	1.265747e-15	2.193160e-11	4.386321e-12
6	7946180	8026900	NM_002248	KCNN1	0.679435	1.615135e-15	2.798545e-11	4.664241e-12
7	7946180	7923360	NM_003281	TNNI1	0.668297	6.763506e-15	1.171913e-10	1.674161e-11
8	7946180	8036270	NM_152658	THAP8	0.666362	8.620177e-15	1.493618e-10	1.867023e-11
9	7946180	8046604	NM_003659	AGPS	-0.665312	9.825637e-15	1.702488e-10	1.891654e-11
10	7946180	8021113	NM_145055	C18orf25	-0.663795	1.185966e-14	2.054924e-10	2.054924e-11
11	7946180	7913450	NM_005529	HSPG2	0.661164	1.639360e-14	2.840519e-10	2.582290e-11
12	7946180	8034821	NM_000955	PTGER1	0.659522	2.003154e-14	3.470865e-10	2.892387e-11
13	7946180	7922823	NM_025191	EDEM3	-0.658732	2.205105e-14	3.820785e-10	2.939066e-11
14	7946180	8013384	NM_000691	ALDH3A1	0.658012	2.406017e-14	4.168905e-10	2.977789e-11
15	7946180	7937560	NM_002457	MUC2	0.657774	2.476300e-14	4.290684e-10	2.860456e-11
16	7946180	8028407	NM_000540	RYR1	0.657257	2.635771e-14	4.567000e-10	2.854375e-11
17	7946180	7945475	NM_021924	CDHR5	0.656604	2.851492e-14	4.940781e-10	2.906342e-11
18	7946180	8039362	NM_178837	C19orf51	0.653999	3.895326e-14	6.749431e-10	3.749684e-11
19	7946180	8051024	NM_178553	C2orf53	0.652867	4.456735e-14	7.722185e-10	4.064308e-11
20	7946180	8060660	NM_052970	HSPA12B	0.651138	5.468036e-14	9.474466e-10	4.737233e-11
21	7946180	8097373	BC034253	C4orf29	-0.651029	5.538926e-14	9.597296e-10	4.570141e-11
22	7946180	8137537	NM_001427	EN2	0.650727	5.739586e-14	9.944981e-10	4.520446e-11
23	7946180	8082788	NM_001134422	CDV3	-0.650235	6.081834e-14	1.053799e-9	4.581736e-11
24	7946180	8011626	NM_003342	UBE2G1	-0.650120	6.164465e-14	1.068117e-9	4.450487e-11
25	7946180	7968835	NM_016248	AKAP11	-0.649404	6.704417e-14	1.161674e-9	4.646697e-11
26	7946180	8074888	ENST00000412037		0.649256	6.821302e-14	1.181927e-9	4.545873e-11
27	7946180	8120022	NM_001253	CDC5L	-0.649229	6.843038e-14	1.185693e-9	4.391456e-11
28	7946180	7929664	NM_138413	DHDPSL	0.648564	7.396483e-14	1.281589e-9	4.577102e-11
29	7946180	8103859	NM_001012732	DCTD	-0.647757	8.126412e-14	1.408063e-9	4.855391e-11
30	7946180	8083523	NM_003875	GMPS	-0.647746	8.136567e-14	1.409823e-9	4.699410e-11
31	7946180	7960894	NR_024420	LOC389634	0.647048	8.824018e-14	1.528938e-9	4.932057e-11
32	7946180	8093440	NM_001004356	FGFRL1	0.646872	9.006807e-14	1.560609e-9	4.876905e-11
33	7946180	7987701	NM_016642	SPTBN5	0.646615	9.278737e-14	1.607727e-9	4.871899e-11
34	7946180	8163548	NM_138424	KIF12	0.645394	1.068690e-13	1.851719e-9	5.446231e-11
35	7946180	8133704	NM_001110199	SRRM3	0.645279	1.082920e-13	1.876376e-9	5.361074e-11
36	7946180	8111533	NM_001007527	LMBRD2	-0.645182	1.095141e-13	1.897551e-9	5.270974e-11
37	7946180	8024100	NM_138690	GRIN3B	0.645161	1.097832e-13	1.902214e-9	5.141120e-11
38	7946180	7992147	NM_021098	CACNA1H	0.644092	1.241544e-13	2.151224e-9	5.661115e-11
39	7946180	8020141	NM_153000	APCDD1	0.643667	1.303541e-13	2.258645e-9	5.791397e-11
40	7946180	8133809	NM_198467	RSBN1L	-0.643273	1.363797e-13	2.363052e-9	5.907630e-11
41	7946180	7952893	BC024764	IQSEC3	0.642867	1.428607e-13	2.475347e-9	6.037433e-11
42	7946180	8114193	NM_001033503	SAR1B	-0.642003	1.576703e-13	2.731953e-9	6.504651e-11
43	7946180	8115691	NM_003062	SLIT3	0.641974	1.582013e-13	2.741154e-9	6.374777e-11
44	7946180	7967641	NM_133448	TMEM132D	0.641723	1.627905e-13	2.820671e-9	6.410615e-11
45	7946180	8038565	ENST00000430752		0.640950	1.777432e-13	3.079756e-9	6.843902e-11
46	7946180	7962085	NM_006390	IPO8	-0.640887	1.790082e-13	3.101675e-9	6.742772e-11
47	7946180	7989806	NM_197960	DPP8	-0.640155	1.944946e-13	3.370009e-9	7.170231e-11
48	7946180	8110382	NM_030567	PRR7	0.639996	1.980368e-13	3.431383e-9	7.148715e-11
49	7946180	7915160	NM_022157	RRAGC	-0.639897	2.002741e-13	3.470149e-9	7.081937e-11
50	7946180	7906284	NM_144702	C1orf92	0.639819	2.020308e-13	3.500588e-9	7.001175e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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