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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5701 7896822 NM_198576 AGRN link to infopage agrin

Fetching correlation data, please wait...
Getting list of correlations for id 5701.
Getting list of p-values for id 5701.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7896822 8060126 NM_198998 AQP12A link to infopage 0.856057 2.752207e-31 4.768749e-27 4.768749e-27
2 7896822 8067409 NM_005560 LAMA5 link to infopage 0.845434 8.114004e-30 1.405913e-25 7.029567e-26
3 7896822 8153101 NM_152888 COL22A1 link to infopage 0.837827 7.855550e-29 1.361131e-24 4.537104e-25
4 7896822 8153346 NM_023946 LYNX1 link to infopage 0.835781 1.418144e-28 2.457218e-24 6.143045e-25
5 7896822 7936882 NM_001146340 NKX1-2 link to infopage 0.835150 1.698549e-28 2.943076e-24 5.886152e-25
6 7896822 7914361 NM_001856 COL16A1 link to infopage 0.833816 2.481510e-28 4.299713e-24 7.166188e-25
7 7896822 7937560 NM_002457 MUC2 link to infopage 0.832981 3.141328e-28 5.442979e-24 7.775685e-25
8 7896822 7937363 NM_007183 PKP3 link to infopage 0.830763 5.836689e-28 1.011323e-23 1.264154e-24
9 7896822 7952893 BC024764 IQSEC3 link to infopage 0.826473 1.887139e-27 3.269846e-23 3.633162e-24
10 7896822 8010583 NR_027255 LOC388428 link to infopage 0.826053 2.113439e-27 3.661955e-23 3.661955e-24
11 7896822 8131056 NM_017781 CYP2W1 link to infopage 0.825402 2.517124e-27 4.361421e-23 3.964929e-24
12 7896822 7960894 NR_024420 LOC389634 link to infopage 0.825138 2.700962e-27 4.679957e-23 3.899964e-24
13 7896822 8049729 NM_198998 AQP12A link to infopage 0.823796 3.861507e-27 6.690834e-23 5.146795e-24
14 7896822 8029458 NM_001039213 CEACAM16 link to infopage 0.823332 4.366666e-27 7.566123e-23 5.404373e-24
15 7896822 8125805 NM_000841 GRM4 link to infopage 0.821165 7.715023e-27 1.336782e-22 8.911880e-24
16 7896822 8170965 NM_139250 CTAG1A link to infopage 0.820731 8.638496e-27 1.496792e-22 9.354951e-24
17 7896822 8176149 NM_139250 CTAG1A link to infopage 0.820731 8.638496e-27 1.496792e-22 8.804660e-24
18 7896822 8150928 NM_003580 NSMAF link to infopage -0.819086 1.322494e-26 2.291485e-22 1.273047e-23
19 7896822 8005328 NM_016239 MYO15A link to infopage 0.814411 4.333547e-26 7.508737e-22 3.951967e-23
20 7896822 8074131 NM_001080420 SHANK3 link to infopage 0.814059 4.732129e-26 8.199360e-22 4.099680e-23
21 7896822 8121209 NM_005604 POU3F2 link to infopage 0.813841 4.997078e-26 8.658437e-22 4.123065e-23
22 7896822 7973745 NM_005249 FOXG1 link to infopage 0.813298 5.721435e-26 9.913530e-22 4.506150e-23
23 7896822 8013606 NM_000638 VTN link to infopage 0.813174 5.899881e-26 1.022272e-21 4.444662e-23
24 7896822 8001014 NM_173502 PRSS36 link to infopage 0.810029 1.279474e-25 2.216945e-21 9.237273e-23
25 7896822 7994961 NM_001330 CTF1 link to infopage 0.809302 1.526939e-25 2.645728e-21 1.058291e-22
26 7896822 7898256 NM_001013641 TMEM82 link to infopage 0.808524 1.843767e-25 3.194694e-21 1.228729e-22
27 7896822 8039362 NM_178837 C19orf51 link to infopage 0.807647 2.277572e-25 3.946349e-21 1.461611e-22
28 7896822 8137330 ENST00000356058 link to infopage 0.807461 2.381703e-25 4.126776e-21 1.473849e-22
29 7896822 8049942 NM_080741 NEU4 link to infopage 0.806988 2.667891e-25 4.622655e-21 1.594019e-22
30 7896822 8125383 NM_004557 NOTCH4 link to infopage 0.805284 4.005143e-25 6.939711e-21 2.313237e-22
31 7896822 8159624 BC052297 C9orf169 link to infopage 0.804389 4.948901e-25 8.574962e-21 2.766117e-22
32 7896822 8119435 NM_004828 NCR2 link to infopage 0.803212 6.526503e-25 1.130847e-20 3.533898e-22
33 7896822 8048460 NM_003936 CDK5R2 link to infopage 0.802504 7.703238e-25 1.334740e-20 4.044667e-22
34 7896822 8015210 NM_033184 KRTAP2-4 link to infopage 0.802343 7.996663e-25 1.385582e-20 4.075241e-22
35 7896822 8019576 NM_033184 KRTAP2-4 link to infopage 0.802343 7.996663e-25 1.385582e-20 3.958805e-22
36 7896822 7945688 NR_003512 INS-IGF2 link to infopage 0.801950 8.764027e-25 1.518543e-20 4.218175e-22
37 7896822 7913450 NM_005529 HSPG2 link to infopage 0.801317 1.015096e-24 1.758857e-20 4.753668e-22
38 7896822 8110382 NM_030567 PRR7 link to infopage 0.801182 1.047462e-24 1.814937e-20 4.776149e-22
39 7896822 8040792 NM_007046 EMILIN1 link to infopage 0.800965 1.101404e-24 1.908403e-20 4.893341e-22
40 7896822 7998015 NM_032451 SPIRE2 link to infopage 0.800859 1.128796e-24 1.955866e-20 4.889664e-22
41 7896822 7985459 ENST00000342039 link to infopage 0.800742 1.159838e-24 2.009651e-20 4.901587e-22
42 7896822 7990928 ENST00000342039 link to infopage 0.800742 1.159838e-24 2.009651e-20 4.784882e-22
43 7896822 7985418 ENST00000342039 link to infopage 0.800742 1.159838e-24 2.009651e-20 4.673606e-22
44 7896822 7912004 NM_207370 GPR153 link to infopage 0.800505 1.224967e-24 2.122500e-20 4.823863e-22
45 7896822 8067270 NM_153360 APCDD1L link to infopage 0.800310 1.281424e-24 2.220324e-20 4.934053e-22
46 7896822 8133704 NM_001110199 SRRM3 link to infopage 0.799893 1.410411e-24 2.443820e-20 5.312652e-22
47 7896822 8115691 NM_003062 SLIT3 link to infopage 0.799812 1.436915e-24 2.489743e-20 5.297326e-22
48 7896822 8002845 NM_001025200 CTRB2 link to infopage 0.799796 1.442238e-24 2.498966e-20 5.206178e-22
49 7896822 8110783 NM_198253 TERT link to infopage 0.799435 1.566684e-24 2.714594e-20 5.539988e-22
50 7896822 7920027 NM_007185 CELF3 link to infopage 0.799196 1.655152e-24 2.867882e-20 5.735764e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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