[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12560.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12560	8176149	NM_139250	CTAG1A		cancer/testis antigen 1A

Fetching correlation data, please wait...
Getting list of correlations for id 12560.
Getting list of p-values for id 12560.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8176149	8170965	NM_139250	CTAG1A	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8176149	8067409	NM_005560	LAMA5	0.869740	2.308535e-33	3.999999e-29	2.000000e-29
3	8176149	7934544	NM_144589	COMTD1	0.842085	2.237063e-29	3.876159e-25	1.292053e-25
4	8176149	7914361	NM_001856	COL16A1	0.831882	4.274502e-28	7.406430e-24	1.851608e-24
5	8176149	7960894	NR_024420	LOC389634	0.826807	1.724439e-27	2.987936e-23	5.975872e-24
6	8176149	8131056	NM_017781	CYP2W1	0.824652	3.075569e-27	5.329039e-23	8.881732e-24
7	8176149	7949015	NM_001144936	C11orf95	0.823339	4.359086e-27	7.552988e-23	1.078998e-23
8	8176149	7981447	NM_001100119	XRCC3	0.821338	7.375425e-27	1.277940e-22	1.597425e-23
9	8176149	7896822	NM_198576	AGRN	0.820731	8.638496e-27	1.496792e-22	1.663102e-23
10	8176149	8016168	NM_133373	PLCD3	0.819605	1.156646e-26	2.004120e-22	2.004120e-23
11	8176149	8125568	NM_080680	COL11A2	0.815638	3.184228e-26	5.517312e-22	5.015738e-23
12	8176149	8010696	NM_148896	NPB	0.814874	3.859039e-26	6.686558e-22	5.572131e-23
13	8176149	8019693	NM_148896	NPB	0.814874	3.859039e-26	6.686558e-22	5.143506e-23
14	8176149	7994961	NM_001330	CTF1	0.813992	4.812855e-26	8.339235e-22	5.956596e-23
15	8176149	7937560	NM_002457	MUC2	0.813574	5.341787e-26	9.255714e-22	6.170476e-23
16	8176149	8034643	NM_001127221	CACNA1A	0.813121	5.977431e-26	1.035709e-21	6.473184e-23
17	8176149	8032088	NM_214710	PRSSL1	0.812141	7.619236e-26	1.320185e-21	7.765795e-23
18	8176149	8028407	NM_000540	RYR1	0.811748	8.395829e-26	1.454745e-21	8.081919e-23
19	8176149	7949843	NM_016366	CABP2	0.811497	8.929813e-26	1.547269e-21	8.143519e-23
20	8176149	7896761	NM_152486	SAMD11	0.808528	1.842013e-25	3.191655e-21	1.595828e-22
21	8176149	8153704	NM_031309	SCRT1	0.807228	2.518880e-25	4.364463e-21	2.078316e-22
22	8176149	7899284	NM_001013642	TRNP1	0.806457	3.029712e-25	5.249581e-21	2.386173e-22
23	8176149	8039362	NM_178837	C19orf51	0.805848	3.502363e-25	6.068545e-21	2.638498e-22
24	8176149	8035639	NM_023002	HAPLN4	0.804523	4.794658e-25	8.307704e-21	3.461544e-22
25	8176149	7897089	NM_014638	PLCH2	0.803946	5.493337e-25	9.518304e-21	3.807322e-22
26	8176149	7992049	NM_207112	HAGHL	0.803612	5.943134e-25	1.029767e-20	3.960641e-22
27	8176149	7945688	NR_003512	INS-IGF2	0.803132	6.651384e-25	1.152485e-20	4.268464e-22
28	8176149	8049670	NM_002081	GPC1	0.802322	8.035940e-25	1.392387e-20	4.972812e-22
29	8176149	8059244	NM_024536	CHPF	0.801893	8.880687e-25	1.538757e-20	5.306057e-22
30	8176149	7911435	NM_001014980	FAM132A	0.801061	1.077199e-24	1.866463e-20	6.221542e-22
31	8176149	8086985	NM_000094	COL7A1	0.800216	1.309245e-24	2.268529e-20	7.317836e-22
32	8176149	8137330	ENST00000356058		0.800163	1.325415e-24	2.296547e-20	7.176709e-22
33	8176149	8007259	ENST00000225928		0.800159	1.326766e-24	2.298888e-20	6.966326e-22
34	8176149	8076747	AK123383	LOC642648	0.800135	1.334116e-24	2.311623e-20	6.798891e-22
35	8176149	8038109	NM_017708	FAM83E	0.800127	1.336529e-24	2.315804e-20	6.616584e-22
36	8176149	8042896	NM_016170	TLX2	0.799996	1.377370e-24	2.386568e-20	6.629356e-22
37	8176149	7945536	NM_016564	CEND1	0.799794	1.442776e-24	2.499899e-20	6.756483e-22
38	8176149	7958577	NM_032829	C12orf34	0.799658	1.488643e-24	2.579371e-20	6.787819e-22
39	8176149	7952893	BC024764	IQSEC3	0.799089	1.696034e-24	2.938719e-20	7.535176e-22
40	8176149	8104122	NM_033178	DUX4	0.798923	1.761944e-24	3.052921e-20	7.632302e-22
41	8176149	8126379	ENST00000341865		0.798399	1.985803e-24	3.440800e-20	8.392196e-22
42	8176149	8006063	NM_152345	ANKRD13B	0.798133	2.109928e-24	3.655872e-20	8.704458e-22
43	8176149	7913226	NM_012400	PLA2G2D	0.797823	2.263967e-24	3.922776e-20	9.122734e-22
44	8176149	8027213	NM_198537	YJEFN3	0.797607	2.377828e-24	4.120062e-20	9.363777e-22
45	8176149	8063796	NM_001794	CDH4	0.797567	2.399504e-24	4.157621e-20	9.239157e-22
46	8176149	8035249	NM_005234	NR2F6	0.797493	2.440373e-24	4.228434e-20	9.192247e-22
47	8176149	8075126	NM_002430	MN1	0.797284	2.558780e-24	4.433598e-20	9.433186e-22
48	8176149	7915297	NM_001852	COL9A2	0.797197	2.609288e-24	4.521114e-20	9.418987e-22
49	8176149	8027556	NM_002333	LRP3	0.796667	2.941849e-24	5.097342e-20	1.040274e-21
50	8176149	8001449	NM_024336	IRX3	0.796548	3.021720e-24	5.235734e-20	1.047147e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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