[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7389	7935855	NM_006562	LBX1		ladybird homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 7389.
Getting list of p-values for id 7389.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7935855	8171867	NM_139058	ARX	0.844217	1.176037e-29	2.037719e-25	2.037719e-25
2	7935855	7903519	NM_018061	PRPF38B	-0.834674	1.945665e-28	3.371254e-24	1.685627e-24
3	7935855	8039504	NM_001145176	SHISA7	0.820106	1.016170e-26	1.760717e-22	5.869058e-23
4	7935855	7942064	NM_015973	GAL	0.819238	1.271770e-26	2.203595e-22	5.508988e-23
5	7935855	8047736			0.818902	1.386694e-26	2.402725e-22	4.805450e-23
6	7935855	7896929	NM_022834	VWA1	0.817765	1.855873e-26	3.215671e-22	5.359452e-23
7	7935855	8134180	NM_019004	ANKIB1	-0.817320	2.078927e-26	3.602158e-22	5.145939e-23
8	7935855	8050497	NM_145260	OSR1	0.816918	2.302996e-26	3.990401e-22	4.988002e-23
9	7935855	8021826	NM_171999	SALL3	0.815992	2.912142e-26	5.045869e-22	5.606521e-23
10	7935855	8028872	NM_001042544	LTBP4	0.815210	3.546752e-26	6.145457e-22	6.145457e-23
11	7935855	8004763	NM_000180	GUCY2D	0.814492	4.246622e-26	7.358122e-22	6.689202e-23
12	7935855	7967304	NM_198261	RSRC2	-0.814251	4.511141e-26	7.816454e-22	6.513712e-23
13	7935855	8060604	NM_000915	OXT	0.811182	9.648535e-26	1.671802e-21	1.286001e-22
14	7935855	7905020	NM_000798	DRD5	0.810169	1.236626e-25	2.142701e-21	1.530501e-22
15	7935855	7947928	NM_031909	C1QTNF4	0.808602	1.809336e-25	3.135036e-21	2.090024e-22
16	7935855	8146243	NM_032410	HOOK3	-0.804010	5.412152e-25	9.377635e-21	5.861022e-22
17	7935855	8131087	NM_001080461	UNCX	0.803463	6.153930e-25	1.066291e-20	6.272303e-22
18	7935855	7989253	NM_024755	SLTM	-0.803458	6.161282e-25	1.067565e-20	5.930919e-22
19	7935855	7975863	NM_017926	C14orf118	-0.802788	7.207979e-25	1.248927e-20	6.573298e-22
20	7935855	8104314	NM_024337	IRX1	0.799313	1.611326e-24	2.791945e-20	1.395973e-21
21	7935855	8075130	NM_012399	PITPNB	-0.798842	1.794570e-24	3.109451e-20	1.480691e-21
22	7935855	7974066	NM_002687	PNN	-0.798018	2.166040e-24	3.753097e-20	1.705953e-21
23	7935855	8073992	NM_052839	PANX2	0.797500	2.436595e-24	4.221887e-20	1.835603e-21
24	7935855	8162179	NM_002048	GAS1	0.797427	2.477128e-24	4.292119e-20	1.788383e-21
25	7935855	8027222	NM_153221	CILP2	0.796922	2.777338e-24	4.812294e-20	1.924917e-21
26	7935855	7951703	NM_000795	DRD2	0.796446	3.092645e-24	5.358626e-20	2.061010e-21
27	7935855	7975521	NM_021239	RBM25	-0.794167	5.153229e-24	8.929000e-20	3.307037e-21
28	7935855	8141643	NM_001015072	UFSP1	0.793623	5.816199e-24	1.007773e-19	3.599188e-21
29	7935855	8140942	NM_001040057	FAM133B	-0.792789	6.996429e-24	1.212271e-19	4.180246e-21
30	7935855	8059739	NM_024409	NPPC	0.792504	7.451323e-24	1.291091e-19	4.303636e-21
31	7935855	8157700	NM_012197	RABGAP1	-0.791309	9.692251e-24	1.679376e-19	5.417343e-21
32	7935855	8013112	NM_016084	RASD1	0.790246	1.222802e-23	2.118749e-19	6.621092e-21
33	7935855	7971550	NM_014166	MED4	-0.789538	1.426392e-23	2.471510e-19	7.489424e-21
34	7935855	8138770	NM_000522	HOXA13	0.789080	1.575356e-23	2.729620e-19	8.028295e-21
35	7935855	8049199	NM_001103147	GIGYF2	-0.789000	1.602958e-23	2.777445e-19	7.935558e-21
36	7935855	8039526	NM_032836	FIZ1	0.788969	1.613728e-23	2.796106e-19	7.766960e-21
37	7935855	7903321	NM_001130841	RTCD1	-0.787653	2.143407e-23	3.713881e-19	1.003752e-20
38	7935855	7942839	NM_015885	PCF11	-0.786889	2.525174e-23	4.375368e-19	1.151413e-20
39	7935855	8166500	NM_003410	ZFX	-0.786613	2.678411e-23	4.640884e-19	1.189970e-20
40	7935855	8084146	NM_001013439	FXR1	-0.786489	2.750290e-23	4.765427e-19	1.191357e-20
41	7935855	7902382	NM_004582	RABGGTB	-0.785705	3.250586e-23	5.632290e-19	1.373729e-20
42	7935855	8101324	NM_031370	HNRNPD	-0.785420	3.453894e-23	5.984562e-19	1.424896e-20
43	7935855	8085852	NM_018297	NGLY1	-0.784675	4.044743e-23	7.008327e-19	1.629843e-20
44	7935855	7954613	NM_018318	CCDC91	-0.784536	4.165106e-23	7.216879e-19	1.640200e-20
45	7935855	8154316	NM_152896	UHRF2	-0.783853	4.811671e-23	8.337182e-19	1.852707e-20
46	7935855	8007100	NM_001552	IGFBP4	0.783827	4.837201e-23	8.381417e-19	1.822047e-20
47	7935855	8023195	NM_005901	SMAD2	-0.783768	4.898234e-23	8.487170e-19	1.805781e-20
48	7935855	8087951	NM_018165	PBRM1	-0.783489	5.193986e-23	8.999619e-19	1.874921e-20
49	7935855	8050658	NM_017552	ATAD2B	-0.783313	5.389771e-23	9.338856e-19	1.905889e-20
50	7935855	8137330	ENST00000356058		0.783254	5.457137e-23	9.455581e-19	1.891116e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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