[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2636	8134745	NM_012447	STAG3		stromal antigen 3

Fetching correlation data, please wait...
Getting list of correlations for id 2636.
Getting list of p-values for id 2636.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8134745	8005328	NM_016239	MYO15A	0.703394	5.931057e-17	1.027674e-12	1.027674e-12
2	8134745	7937257	NM_145651	SCGB1C1	0.693653	2.362689e-16	4.093832e-12	2.046916e-12
3	8134745	8042558	NM_024933	ANKRD53	0.685001	7.710095e-16	1.335928e-11	4.453094e-12
4	8134745	8070744	NM_004928	C21orf2	0.683333	9.638530e-16	1.670068e-11	4.175170e-12
5	8134745	8016168	NM_133373	PLCD3	0.678394	1.851467e-15	3.208037e-11	6.416073e-12
6	8134745	7985920	NM_001039958	MESP2	0.678298	1.874765e-15	3.248406e-11	5.414009e-12
7	8134745	7942717	NM_000260	MYO7A	0.678221	1.893846e-15	3.281468e-11	4.687811e-12
8	8134745	8116033	NM_000505	F12	0.677829	1.993143e-15	3.453519e-11	4.316899e-12
9	8134745	7992092	NM_022092	CHTF18	0.675959	2.542303e-15	4.405049e-11	4.894498e-12
10	8134745	7914580	NM_153756	FNDC5	0.674968	2.890171e-15	5.007800e-11	5.007800e-12
11	8134745	7923628	NM_198447	GOLT1A	0.673738	3.386059e-15	5.867024e-11	5.333658e-12
12	8134745	8033151	NM_133492	ACER1	0.670728	4.973983e-15	8.618421e-11	7.182017e-12
13	8134745	8019711	NM_145651	SCGB1C1	0.669242	6.003830e-15	1.040284e-10	8.002182e-12
14	8134745	8012344	NM_032580	HES7	0.667687	7.302956e-15	1.265383e-10	9.038452e-12
15	8134745	8053142	NM_033046	RTKN	0.665508	9.588860e-15	1.661462e-10	1.107641e-11
16	8134745	8134737	NM_203397	MBLAC1	0.664870	1.038126e-14	1.798761e-10	1.124226e-11
17	8134745	7966631	NM_022363	LHX5	0.664839	1.042072e-14	1.805598e-10	1.062116e-11
18	8134745	8003810	ENST00000322899		0.663923	1.167308e-14	2.022595e-10	1.123664e-11
19	8134745	8110990	NM_001332	CTNND2	0.662438	1.402138e-14	2.429484e-10	1.278676e-11
20	8134745	8138592	AB052759	TRA2A	-0.662294	1.427228e-14	2.472957e-10	1.236479e-11
21	8134745	8054804	NM_019044	CCDC93	-0.661339	1.604583e-14	2.780262e-10	1.323934e-11
22	8134745	8079021	NM_001904	CTNNB1	-0.660276	1.827293e-14	3.166151e-10	1.439160e-11
23	8134745	7897890	NM_015378	VPS13D	-0.660075	1.872635e-14	3.244715e-10	1.410746e-11
24	8134745	8064108	BC000912	C20orf195	0.659831	1.929332e-14	3.342954e-10	1.392897e-11
25	8134745	8113981	NM_004199	P4HA2	0.657299	2.622618e-14	4.544210e-10	1.817684e-11
26	8134745	8037785	NM_033258	GNG8	0.657214	2.649373e-14	4.590568e-10	1.765603e-11
27	8134745	8008201	NM_002507	NGFR	0.657120	2.679617e-14	4.642972e-10	1.719619e-11
28	8134745	8048272	BC052750	C2orf62	0.655896	3.104925e-14	5.379903e-10	1.921394e-11
29	8134745	7998843	NM_031948	PRSS27	0.655518	3.248878e-14	5.629331e-10	1.941149e-11
30	8134745	8028778	NM_002446	MAP3K10	0.655182	3.382214e-14	5.860362e-10	1.953454e-11
31	8134745	8032197	NM_152769	C19orf26	0.654545	3.649883e-14	6.324152e-10	2.040049e-11
32	8134745	8111216	ENST00000426411		0.654006	3.892518e-14	6.744566e-10	2.107677e-11
33	8134745	7958577	NM_032829	C12orf34	0.653837	3.971281e-14	6.881039e-10	2.085163e-11
34	8134745	8119765	NM_032538	TTBK1	0.653081	4.345061e-14	7.528688e-10	2.214320e-11
35	8134745	8151125	ENST00000340798		0.651700	5.117381e-14	8.866886e-10	2.533396e-11
36	8134745	7989516	NM_003922	HERC1	-0.651583	5.188327e-14	8.989815e-10	2.497171e-11
37	8134745	8067610	NM_000744	CHRNA4	0.651053	5.523477e-14	9.570529e-10	2.586630e-11
38	8134745	8132660	NM_005856	RAMP3	0.650116	6.167430e-14	1.068631e-9	2.812186e-11
39	8134745	7958724	ENST00000331096		0.649950	6.288772e-14	1.089655e-9	2.793988e-11
40	8134745	7945162	NM_003658	BARX2	0.649797	6.402417e-14	1.109347e-9	2.773367e-11
41	8134745	8067652	NM_001958	EEF1A2	0.649583	6.564956e-14	1.137510e-9	2.774415e-11
42	8134745	8143247	NM_020910	KIAA1549	0.649454	6.665457e-14	1.154924e-9	2.749818e-11
43	8134745	7897416	NM_001080397	SLC45A1	0.649041	6.995259e-14	1.212069e-9	2.818764e-11
44	8134745	8060660	NM_052970	HSPA12B	0.648954	7.067281e-14	1.224548e-9	2.783063e-11
45	8134745	8038670	NM_012427	KLK5	0.648872	7.134552e-14	1.236204e-9	2.747120e-11
46	8134745	8159670	NM_006647	NOXA1	0.648469	7.478766e-14	1.295846e-9	2.817056e-11
47	8134745	7922823	NM_025191	EDEM3	-0.648457	7.489565e-14	1.297717e-9	2.761100e-11
48	8134745	8172367			0.646907	8.969761e-14	1.554191e-9	3.237897e-11
49	8134745	7937560	NM_002457	MUC2	0.646876	9.002499e-14	1.559863e-9	3.183394e-11
50	8134745	7896985	NM_080875	MIB2	0.646807	9.074791e-14	1.572389e-9	3.144778e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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