[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
772	8104394	NM_020546	ADCY2		adenylate cyclase 2 (brain)

Fetching correlation data, please wait...
Getting list of correlations for id 772.
Getting list of p-values for id 772.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8104394	8124038	ENST00000384464		0.717638	7.083552e-18	1.227367e-13	1.227367e-13
2	8104394	8111216	ENST00000426411		0.700414	9.106066e-17	1.577808e-12	7.889040e-13
3	8104394	8020549			0.698262	1.237110e-16	2.143541e-12	7.145136e-13
4	8104394	8056041			0.695540	1.815662e-16	3.145998e-12	7.864995e-13
5	8104394	7931097	NM_002775	HTRA1	0.692629	2.723680e-16	4.719320e-12	9.438640e-13
6	8104394	8037563	NM_006663	PPP1R13L	0.691810	3.050391e-16	5.285413e-12	8.809021e-13
7	8104394	7896929	NM_022834	VWA1	0.690687	3.560465e-16	6.169218e-12	8.813169e-13
8	8104394	8149685	NM_139278	LGI3	0.688930	4.529081e-16	7.847539e-12	9.809423e-13
9	8104394	7920552	NM_002249	KCNN3	0.687133	5.782765e-16	1.001980e-11	1.113311e-12
10	8104394	8137468	ENST00000021776		0.685534	7.176808e-16	1.243525e-11	1.243525e-12
11	8104394	8137537	NM_001427	EN2	0.684897	7.818624e-16	1.354733e-11	1.231575e-12
12	8104394	8135319			0.681970	1.155601e-15	2.002310e-11	1.668592e-12
13	8104394	7998444	ENST00000440800		0.681407	1.245164e-15	2.157496e-11	1.659613e-12
14	8104394	8071276	NM_080647	TBX1	0.681337	1.256780e-15	2.177623e-11	1.555445e-12
15	8104394	8060604	NM_000915	OXT	0.677730	2.019122e-15	3.498533e-11	2.332355e-12
16	8104394	8023984	NM_001194	HCN2	0.677563	2.063710e-15	3.575790e-11	2.234869e-12
17	8104394	8003948	NM_001014985	GLTPD2	0.677489	2.083793e-15	3.610588e-11	2.123875e-12
18	8104394	7942693	NM_138706	B3GNT6	0.676688	2.312820e-15	4.007424e-11	2.226347e-12
19	8104394	7992147	NM_021098	CACNA1H	0.674982	2.884993e-15	4.998827e-11	2.630962e-12
20	8104394	8102982	BC064848	GAB1	0.674679	2.999990e-15	5.198083e-11	2.599041e-12
21	8104394	7908812	NM_004767	GPR37L1	0.674476	3.079547e-15	5.335931e-11	2.540920e-12
22	8104394	7903632	NM_001408	CELSR2	0.672886	3.777258e-15	6.544854e-11	2.974934e-12
23	8104394	7897006	NM_006983	MMP23B	0.672010	4.224906e-15	7.320495e-11	3.182824e-12
24	8104394	7949080	NM_015080	NRXN2	0.671774	4.353990e-15	7.544159e-11	3.143400e-12
25	8104394	7970241	NM_000504	F10	0.671060	4.768568e-15	8.262498e-11	3.304999e-12
26	8104394	7922823	NM_025191	EDEM3	-0.670303	5.250115e-15	9.096875e-11	3.498798e-12
27	8104394	7992845	NM_003456	ZNF205	0.670171	5.338705e-15	9.250374e-11	3.426064e-12
28	8104394	8073449	NM_014460	CSDC2	0.668275	6.782337e-15	1.175175e-10	4.197055e-12
29	8104394	7996027	NM_002996	CX3CL1	0.666822	8.139159e-15	1.410272e-10	4.863007e-12
30	8104394	7946354	NM_002315	LMO1	0.666104	8.903095e-15	1.542639e-10	5.142131e-12
31	8104394	7945550	NM_018494	LRDD	0.665450	9.658273e-15	1.673489e-10	5.398352e-12
32	8104394	8026198	NM_023072	ZSWIM4	0.664839	1.042045e-14	1.805552e-10	5.642351e-12
33	8104394	7937774	NM_016412	IGF2AS	0.664702	1.059992e-14	1.836648e-10	5.565599e-12
34	8104394	7896882	NM_001130413	SCNN1D	0.664543	1.081015e-14	1.873074e-10	5.509042e-12
35	8104394	8082289	NM_152889	CHST13	0.663771	1.189585e-14	2.061195e-10	5.889127e-12
36	8104394	7963061	NM_001008223	C1QL4	0.662101	1.461382e-14	2.532136e-10	7.033712e-12
37	8104394	8006865	NM_032192	PPP1R1B	0.661941	1.490351e-14	2.582330e-10	6.979271e-12
38	8104394	7937560	NM_002457	MUC2	0.661876	1.502364e-14	2.603147e-10	6.850386e-12
39	8104394	7960068	NM_024078	NOC4L	0.661618	1.550775e-14	2.687028e-10	6.889815e-12
40	8104394	8134407	NM_005222	DLX6	0.661235	1.625273e-14	2.816111e-10	7.040277e-12
41	8104394	8131087	NM_001080461	UNCX	0.658518	2.263027e-14	3.921146e-10	9.563772e-12
42	8104394	7898594	NM_000871	HTR6	0.658259	2.335272e-14	4.046326e-10	9.634109e-12
43	8104394	7927814	NM_012238	SIRT1	-0.658105	2.378964e-14	4.122031e-10	9.586119e-12
44	8104394	8142971	NM_138693	KLF14	0.658094	2.382203e-14	4.127644e-10	9.381009e-12
45	8104394	8023184	AY669508	SKOR2	0.656214	2.988372e-14	5.177952e-10	1.150656e-11
46	8104394	8139763	NM_001145712	LOC389493	0.656209	2.990437e-14	5.181530e-10	1.126420e-11
47	8104394	7896985	NM_080875	MIB2	0.656078	3.037803e-14	5.263602e-10	1.119915e-11
48	8104394	8067798	NM_018419	SOX18	0.655905	3.101299e-14	5.373621e-10	1.119504e-11
49	8104394	8114245	NM_006161	NEUROG1	0.655765	3.154146e-14	5.465188e-10	1.115344e-11
50	8104394	7911529	NM_032348	MXRA8	0.655514	3.250265e-14	5.631735e-10	1.126347e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation