[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1622	7898167	NM_007272	CTRC		chymotrypsin C (caldecrin)

Fetching correlation data, please wait...
Getting list of correlations for id 1622.
Getting list of p-values for id 1622.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7898167	8106418	NM_001882	CRHBP	0.660363	1.808132e-14	3.132950e-10	3.132950e-10
2	7898167	7900352	NM_022120	OXCT2	0.655367	3.308136e-14	5.732007e-10	2.866003e-10
3	7898167	7915257	NM_022120	OXCT2	0.655367	3.308136e-14	5.732007e-10	1.910669e-10
4	7898167	7914667	NM_052896	CSMD2	0.648318	7.612047e-14	1.318939e-9	3.297348e-10
5	7898167	7920744	NM_000298	PKLR	0.642188	1.543892e-13	2.675102e-9	5.350203e-10
6	7898167	8032465	NM_144616	JSRP1	0.640085	1.960590e-13	3.397115e-9	5.661858e-10
7	7898167	8156783	NM_001855	COL15A1	0.639806	2.023296e-13	3.505765e-9	5.008236e-10
8	7898167	8002830	NM_153486	LDHD	0.638691	2.294670e-13	3.975974e-9	4.969967e-10
9	7898167	8030181	NM_033378	CGB2	0.637993	2.482119e-13	4.300768e-9	4.778631e-10
10	7898167	7897860	NM_001243	TNFRSF8	0.635176	3.400407e-13	5.891885e-9	5.891885e-10
11	7898167	8010783	NM_018949	UTS2R	0.633135	4.263028e-13	7.386548e-9	6.715044e-10
12	7898167	8034469	NM_032301	FBXW9	0.632689	4.477748e-13	7.758594e-9	6.465495e-10
13	7898167	7937112	NM_017609	C10orf92	0.631444	5.134556e-13	8.896645e-9	6.843573e-10
14	7898167	7950425	NM_015424	CHRDL2	0.628254	7.270852e-13	1.259821e-8	8.998718e-10
15	7898167	7984802	NM_001130136	ISLR2	0.626519	8.770314e-13	1.519632e-8	1.013088e-9
16	7898167	7976681	NM_006668	CYP46A1	0.626287	8.992844e-13	1.558190e-8	9.738688e-10
17	7898167	8013606	NM_000638	VTN	0.626183	9.094045e-13	1.575725e-8	9.268971e-10
18	7898167	8103106	NM_006726	LRBA	-0.626041	9.233516e-13	1.599891e-8	8.888285e-10
19	7898167	8038299	NM_033142	CGB7	0.625601	9.680681e-13	1.677372e-8	8.828272e-10
20	7898167	8159078	NM_017586	C9orf7	0.625358	9.936621e-13	1.721718e-8	8.608591e-10
21	7898167	8048272	BC052750	C2orf62	0.625099	1.021667e-12	1.770242e-8	8.429725e-10
22	7898167	8163733	NM_018249	CDK5RAP2	-0.624112	1.135482e-12	1.967450e-8	8.942957e-10
23	7898167	8119386	DQ168992	TDRG1	0.623160	1.256809e-12	2.177672e-8	9.468140e-10
24	7898167	8004802	NM_017622	C17orf59	0.621736	1.461985e-12	2.533181e-8	1.055492e-9
25	7898167	8086051	NM_015551	SUSD5	0.621272	1.535551e-12	2.660649e-8	1.064259e-9
26	7898167	8035648	NM_001001524	TM6SF2	0.620818	1.611059e-12	2.791481e-8	1.073647e-9
27	7898167	7992460	NM_001099456	NPW	0.620528	1.661085e-12	2.878162e-8	1.065986e-9
28	7898167	8159036	NM_139025	ADAMTS13	0.619106	1.929150e-12	3.342638e-8	1.193799e-9
29	7898167	8045075	NM_001161415	GPR17	0.618880	1.975506e-12	3.422958e-8	1.180331e-9
30	7898167	8110990	NM_001332	CTNND2	0.617490	2.284530e-12	3.958405e-8	1.319468e-9
31	7898167	8099406	NM_001189	NKX3-2	0.617457	2.292370e-12	3.971990e-8	1.281287e-9
32	7898167	7987405	NM_005739	RASGRP1	-0.617210	2.352279e-12	4.075794e-8	1.273686e-9
33	7898167	8024306	NM_005883	APC2	0.617155	2.365756e-12	4.099145e-8	1.242165e-9
34	7898167	8076302	NM_138481	CHADL	0.617113	2.376232e-12	4.117297e-8	1.210970e-9
35	7898167	7897263	NM_207396	RNF207	0.617069	2.387206e-12	4.136312e-8	1.181803e-9
36	7898167	7897066	NR_024445	LOC100128003	0.616764	2.464142e-12	4.269619e-8	1.186005e-9
37	7898167	7903239	NM_000028	AGL	-0.615961	2.678721e-12	4.641420e-8	1.254438e-9
38	7898167	8172317	NM_006950	SYN1	0.615798	2.724278e-12	4.720356e-8	1.242199e-9
39	7898167	8086391	NM_000729	CCK	0.615496	2.810977e-12	4.870580e-8	1.248867e-9
40	7898167	8023561	NM_005570	LMAN1	-0.615423	2.832170e-12	4.907300e-8	1.226825e-9
41	7898167	7977888	NM_022478	CDH24	0.615108	2.926234e-12	5.070285e-8	1.236655e-9
42	7898167	8078136	ENST00000364292		0.615008	2.956650e-12	5.122987e-8	1.219759e-9
43	7898167	8063057	NM_033421	SNX21	0.614735	3.041297e-12	5.269655e-8	1.225501e-9
44	7898167	8049016	NM_002807	PSMD1	-0.614419	3.142083e-12	5.444287e-8	1.237338e-9
45	7898167	7937560	NM_002457	MUC2	0.614358	3.161926e-12	5.478670e-8	1.217482e-9
46	7898167	7952893	BC024764	IQSEC3	0.613633	3.407082e-12	5.903451e-8	1.283359e-9
47	7898167	8010320	NM_005189	CBX2	0.612346	3.888873e-12	6.738250e-8	1.433670e-9
48	7898167	8024100	NM_138690	GRIN3B	0.611969	4.041820e-12	7.003261e-8	1.459013e-9
49	7898167	8121209	NM_005604	POU3F2	0.611803	4.110806e-12	7.122793e-8	1.453631e-9
50	7898167	7915385	NM_001956	EDN2	0.611731	4.141558e-12	7.176077e-8	1.435215e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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