[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1188	8156228	NM_001912	CTSL1		cathepsin L1

Fetching correlation data, please wait...
Getting list of correlations for id 1188.
Getting list of p-values for id 1188.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.111 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8156228	8006214	NM_018404	ADAP2	0.575516	1.344479e-10	2.329579e-6	2.329579e-6
2	8156228	8163002	NM_004235	KLF4	0.558433	6.019528e-10	1.043004e-5	5.215018e-6
3	8156228	8054308	NM_001102426	TBC1D8	0.556043	7.374409e-10	1.277764e-5	4.259213e-6
4	8156228	7978123	NM_002818	PSME2	0.547512	1.502513e-9	2.603404e-5	6.508509e-6
5	8156228	7940259	NM_021201	MS4A7	0.537881	3.277086e-9	5.678207e-5	1.135641e-5
6	8156228	8115076	NM_005211	CSF1R	0.534134	4.409767e-9	7.640803e-5	1.273467e-5
7	8156228	8072678	NM_002133	HMOX1	0.529957	6.113381e-9	1.059266e-4	1.513236e-5
8	8156228	8018189	NM_181449	CD300E	0.523099	1.035284e-8	1.793836e-4	2.242295e-5
9	8156228	8007446	NM_005533	IFI35	0.518948	1.416140e-8	2.453746e-4	2.726384e-5
10	8156228	7902850	NM_198460	GBP6	0.516058	1.756855e-8	3.044103e-4	3.044103e-5
11	8156228	8067279	NM_001336	CTSZ	0.507725	3.235414e-8	5.606002e-4	5.096366e-5
12	8156228	8061247	NM_018993	RIN2	0.505458	3.809447e-8	6.600628e-4	5.500524e-5
13	8156228	7981290	NM_004184	WARS	0.502133	4.830123e-8	8.369154e-4	6.437811e-5
14	8156228	7935058	NM_013451	MYOF	0.500819	5.301369e-8	9.185683e-4	6.561202e-5
15	8156228	7951413	NM_001007232	CARD17	0.497720	6.593295e-8	1.142420e-3	7.616135e-5
16	8156228	8126629	NM_019096	GTPBP2	0.495196	7.862165e-8	1.362277e-3	8.514234e-5
17	8156228	8021727	NM_018235	CNDP2	0.494489	8.257219e-8	1.430728e-3	8.416049e-5
18	8156228	8076998	NM_012401	PLXNB2	0.490266	1.104323e-7	1.913460e-3	1.063034e-4
19	8156228	8059361	NM_020830	WDFY1	0.489693	1.148428e-7	1.989881e-3	1.047306e-4
20	8156228	7984103	NM_032857	LACTB	0.485659	1.509732e-7	2.615912e-3	1.307956e-4
21	8156228	7979269	NM_000161	GCH1	0.485393	1.537013e-7	2.663182e-3	1.268182e-4
22	8156228	8164034	NM_020946	DENND1A	0.484479	1.634395e-7	2.831917e-3	1.287235e-4
23	8156228	8101158	NM_005506	SCARB2	0.483684	1.723865e-7	2.986940e-3	1.298670e-4
24	8156228	8171802	NM_001037171	ACOT9	0.483095	1.793135e-7	3.106965e-3	1.294569e-4
25	8156228	8115464	NM_032782	HAVCR2	0.482791	1.829865e-7	3.170607e-3	1.268243e-4
26	8156228	7918323	NM_002959	SORT1	0.477216	2.646349e-7	4.585328e-3	1.763588e-4
27	8156228	8076690	NM_001009880	C22orf9	0.472745	3.540899e-7	6.135316e-3	2.272339e-4
28	8156228	7935639	NM_031212	SLC25A28	0.468273	4.718750e-7	8.176178e-3	2.920063e-4
29	8156228	8178561	NM_021160	BAT5	0.467338	5.008008e-7	8.677376e-3	2.992199e-4
30	8156228	8026971	NM_006332	IFI30	0.465440	5.648182e-7	9.786605e-3	3.262202e-4
31	8156228	7973660	NM_016576	GMPR2	0.464554	5.972858e-7	1.034917e-2	3.338442e-4
32	8156228	7930537	NM_001146274	TCF7L2	0.464149	6.127290e-7	1.061676e-2	3.317736e-4
33	8156228	8030671	NM_003121	SPIB	-0.463327	6.452039e-7	1.117945e-2	3.387711e-4
34	8156228	8087100	NM_003365	UQCRC1	0.463249	6.483703e-7	1.123431e-2	3.304209e-4
35	8156228	8019912	NM_032048	EMILIN2	0.463095	6.546703e-7	1.134347e-2	3.240992e-4
36	8156228	8112803	NM_005779	LHFPL2	0.461502	7.232778e-7	1.253223e-2	3.481176e-4
37	8156228	8174076	NM_000169	GLA	0.460841	7.536809e-7	1.305903e-2	3.529467e-4
38	8156228	8125017	NM_021160	BAT5	0.459637	8.122612e-7	1.407405e-2	3.703697e-4
39	8156228	7935337	NM_152309	PIK3AP1	0.455298	1.061170e-6	1.838689e-2	4.714587e-4
40	8156228	7921738	NM_007122	USF1	0.455220	1.066259e-6	1.847507e-2	4.618768e-4
41	8156228	8019486	NM_003004	SECTM1	0.454855	1.090278e-6	1.889125e-2	4.607621e-4
42	8156228	8039236	NM_021250	LILRA5	0.454673	1.102447e-6	1.910209e-2	4.548117e-4
43	8156228	8023043	NM_024430	PSTPIP2	0.454272	1.129791e-6	1.957588e-2	4.552531e-4
44	8156228	8107094	ENST00000442824		0.450269	1.439979e-6	2.495052e-2	5.670574e-4
45	8156228	7951004	NM_020179	C11orf75	0.450262	1.440535e-6	2.496014e-2	5.546698e-4
46	8156228	8076403	NM_000262	NAGA	0.446074	1.850636e-6	3.206597e-2	6.970862e-4
47	8156228	8139859	NM_000181	GUSB	0.443883	2.106938e-6	3.650692e-2	7.767430e-4
48	8156228	7905047	NM_000566	FCGR1A	0.443322	2.177851e-6	3.773562e-2	7.861588e-4
49	8156228	7917576	NM_052942	GBP5	0.443201	2.193405e-6	3.800513e-2	7.756150e-4
50	8156228	8165011	NM_002003	FCN1	0.442986	2.221345e-6	3.848924e-2	7.697849e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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