[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3237	7964535	NM_000785	CYP27B1		cytochrome P450, family 27, subfamily B, polypeptide 1

Fetching correlation data, please wait...
Getting list of correlations for id 3237.
Getting list of p-values for id 3237.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7964535	7992302	NM_020825	CRAMP1L	0.718258	6.438427e-18	1.115586e-13	1.115586e-13
2	7964535	7953303	NM_018173	PLEKHG6	0.717902	6.801302e-18	1.178462e-13	5.892308e-14
3	7964535	7900792	NM_002840	PTPRF	0.710170	2.192949e-17	3.799723e-13	1.266574e-13
4	7964535	8158431	NM_001100876	PHYHD1	0.703881	5.526801e-17	9.576287e-13	2.394072e-13
5	7964535	8153101	NM_152888	COL22A1	0.702135	7.113056e-17	1.232479e-12	2.464958e-13
6	7964535	8076962	NM_002969	MAPK12	0.701578	7.707315e-17	1.335447e-12	2.225744e-13
7	7964535	8120698	NM_133645	MTO1	-0.699585	1.024959e-16	1.775946e-12	2.537066e-13
8	7964535	8074223	NM_031890	CECR6	0.698240	1.240899e-16	2.150105e-12	2.687631e-13
9	7964535	7953450	NM_014262	LEPREL2	0.697515	1.374899e-16	2.382287e-12	2.646985e-13
10	7964535	7937560	NM_002457	MUC2	0.696840	1.512363e-16	2.620471e-12	2.620471e-13
11	7964535	8132978	ENST00000447142		0.695981	1.706570e-16	2.956974e-12	2.688159e-13
12	7964535	8004167	ENST00000308855		0.695000	1.958269e-16	3.393093e-12	2.827578e-13
13	7964535	8032197	NM_152769	C19orf26	0.694085	2.224847e-16	3.854992e-12	2.965378e-13
14	7964535	8112121	NM_173514	SLC38A9	-0.693661	2.360053e-16	4.089264e-12	2.920903e-13
15	7964535	8165639	BC052297	C9orf169	0.690273	3.768640e-16	6.529923e-12	4.353282e-13
16	7964535	8144703			0.689377	4.260894e-16	7.382851e-12	4.614282e-13
17	7964535	8135099	NM_133457	EMID2	0.687975	5.158604e-16	8.938314e-12	5.257831e-13
18	7964535	8059028	NM_194302	CCDC108	0.687325	5.634380e-16	9.762690e-12	5.423716e-13
19	7964535	8058614	NM_006055	LANCL1	-0.687242	5.697589e-16	9.872213e-12	5.195901e-13
20	7964535	8116195	NM_173465	COL23A1	0.686667	6.159560e-16	1.067267e-11	5.336335e-13
21	7964535	8159624	BC052297	C9orf169	0.686480	6.316892e-16	1.094528e-11	5.212038e-13
22	7964535	8086051	NM_015551	SUSD5	0.686079	6.668585e-16	1.155466e-11	5.252117e-13
23	7964535	8009951	NM_000213	ITGB4	0.684096	8.704901e-16	1.508298e-11	6.557818e-13
24	7964535	7940508	NM_006133	DAGLA	0.684086	8.716808e-16	1.510361e-11	6.293172e-13
25	7964535	7907882	NM_020950	KIAA1614	0.683544	9.371488e-16	1.623798e-11	6.495191e-13
26	7964535	8048460	NM_003936	CDK5R2	0.683280	9.707809e-16	1.682072e-11	6.469508e-13
27	7964535	7928645	NM_001099338	FAM22A	0.682887	1.022990e-15	1.772535e-11	6.564943e-13
28	7964535	8006562	NM_033315	RASL10B	0.682232	1.116153e-15	1.933959e-11	6.906997e-13
29	7964535	8023941	NM_130760	MADCAM1	0.681808	1.180766e-15	2.045913e-11	7.054874e-13
30	7964535	7934870	NM_032810	ATAD1	-0.681191	1.281290e-15	2.220091e-11	7.400302e-13
31	7964535	8034469	NM_032301	FBXW9	0.680638	1.378525e-15	2.388570e-11	7.705065e-13
32	7964535	8093906	NM_006005	WFS1	0.680037	1.492061e-15	2.585294e-11	8.079043e-13
33	7964535	7937200	NM_015722	CALY	0.679345	1.634391e-15	2.831910e-11	8.581544e-13
34	7964535	8062064	NM_020884	MYH7B	0.678945	1.722399e-15	2.984401e-11	8.777651e-13
35	7964535	7928653	NM_001099338	FAM22A	0.678157	1.909764e-15	3.309049e-11	9.454425e-13
36	7964535	7945550	NM_018494	LRDD	0.677345	2.123054e-15	3.678616e-11	1.021838e-12
37	7964535	7919582	XR_039086	LOC100133075	0.675614	2.658334e-15	4.606095e-11	1.244890e-12
38	7964535	8104122	NM_033178	DUX4	0.674839	2.938596e-15	5.091705e-11	1.339922e-12
39	7964535	8159670	NM_006647	NOXA1	0.674757	2.969851e-15	5.145861e-11	1.319451e-12
40	7964535	8115691	NM_003062	SLIT3	0.674669	3.003557e-15	5.204264e-11	1.301066e-12
41	7964535	8037103	NM_002088	GRIK5	0.674568	3.043209e-15	5.272967e-11	1.286090e-12
42	7964535	7955184	NM_006262	PRPH	0.673472	3.504042e-15	6.071454e-11	1.445584e-12
43	7964535	8032839	NM_032108	SEMA6B	0.673403	3.535269e-15	6.125560e-11	1.424549e-12
44	7964535	7914433	NM_001703	BAI2	0.673021	3.712390e-15	6.432459e-11	1.461922e-12
45	7964535	7921936	NM_177398	LMX1A	0.671634	4.432481e-15	7.680160e-11	1.706702e-12
46	7964535	7972567	NM_033132	ZIC5	0.671423	4.553309e-15	7.889519e-11	1.715113e-12
47	7964535	7995310	ENST00000319817		0.670964	4.827136e-15	8.363978e-11	1.779570e-12
48	7964535	8076072	NM_152868	KCNJ4	0.670641	5.029578e-15	8.714750e-11	1.815573e-12
49	7964535	7935983	NM_005029	PITX3	0.670396	5.188032e-15	8.989304e-11	1.834552e-12
50	7964535	7992758	NM_172229	KREMEN2	0.669298	5.962046e-15	1.033044e-10	2.066088e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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