[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5930	7914433	NM_001703	BAI2		brain-specific angiogenesis inhibitor 2

Fetching correlation data, please wait...
Getting list of correlations for id 5930.
Getting list of p-values for id 5930.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7914433	8114550	NM_004883	NRG2	0.795892	3.503160e-24	6.069925e-20	6.069925e-20
2	7914433	7942123	NM_053056	CCND1	0.788012	1.983943e-23	3.437578e-19	1.718789e-19
3	7914433	8008228	NM_138281	DLX4	0.786771	2.589631e-23	4.487054e-19	1.495685e-19
4	7914433	7989887	NM_032445	MEGF11	0.785741	3.226267e-23	5.590154e-19	1.397538e-19
5	7914433	8024605	NM_021938	CELF5	0.784794	3.943836e-23	6.833485e-19	1.366697e-19
6	7914433	8005328	NM_016239	MYO15A	0.782850	5.939924e-23	1.029211e-18	1.715351e-19
7	7914433	7937560	NM_002457	MUC2	0.779378	1.221204e-22	2.115979e-18	3.022828e-19
8	7914433	8155083	NM_001216	CA9	0.778232	1.544871e-22	2.676798e-18	3.345997e-19
9	7914433	7984011	NM_012182	FOXB1	0.776273	2.301656e-22	3.988079e-18	4.431199e-19
10	7914433	7922823	NM_025191	EDEM3	-0.775261	2.823284e-22	4.891903e-18	4.891903e-19
11	7914433	7992147	NM_021098	CACNA1H	0.774304	3.421903e-22	5.929132e-18	5.390120e-19
12	7914433	7972567	NM_033132	ZIC5	0.773356	4.135607e-22	7.165767e-18	5.971472e-19
13	7914433	7936826	NM_022466	IKZF5	-0.772524	4.881114e-22	8.457506e-18	6.505773e-19
14	7914433	8144703			0.768542	1.067810e-21	1.850195e-17	1.321568e-18
15	7914433	8031157	NM_020659	TTYH1	0.768510	1.074415e-21	1.861640e-17	1.241093e-18
16	7914433	7941890	NM_020811	CARNS1	0.767218	1.380556e-21	2.392089e-17	1.495056e-18
17	7914433	7987701	NM_016642	SPTBN5	0.765853	1.795766e-21	3.111524e-17	1.830308e-18
18	7914433	8012309	NM_001139	ALOX12B	0.764961	2.130745e-21	3.691942e-17	2.051079e-18
19	7914433	7952893	BC024764	IQSEC3	0.764565	2.298074e-21	3.981873e-17	2.095723e-18
20	7914433	8125383	NM_004557	NOTCH4	0.763476	2.827145e-21	4.898593e-17	2.449297e-18
21	7914433	8032465	NM_144616	JSRP1	0.762982	3.104677e-21	5.379474e-17	2.561654e-18
22	7914433	7953150	NM_003213	TEAD4	0.762904	3.151027e-21	5.459785e-17	2.481721e-18
23	7914433	7906307	NM_018240	KIRREL	0.762528	3.383462e-21	5.862525e-17	2.548924e-18
24	7914433	8048272	BC052750	C2orf62	0.762524	3.385749e-21	5.866487e-17	2.444370e-18
25	7914433	7973580	NM_203402	FITM1	0.762301	3.531207e-21	6.118522e-17	2.447409e-18
26	7914433	8007537	NM_145273	CD300LG	0.761767	3.905170e-21	6.766488e-17	2.602495e-18
27	7914433	8032312	NM_138813	ATP8B3	0.761752	3.916416e-21	6.785973e-17	2.513323e-18
28	7914433	7972899	BX647655	DKFZp451A211	0.760991	4.518013e-21	7.828361e-17	2.795843e-18
29	7914433	7961767	AK295862	KIAA0528	-0.760423	5.025550e-21	8.707771e-17	3.002680e-18
30	7914433	8155942	NM_001013735	FOXB2	0.759786	5.659988e-21	9.807061e-17	3.269020e-18
31	7914433	7913450	NM_005529	HSPG2	0.759295	6.201270e-21	1.074494e-16	3.466110e-18
32	7914433	8048460	NM_003936	CDK5R2	0.759102	6.428482e-21	1.113863e-16	3.480822e-18
33	7914433	8052024	NM_025133	FBXO11	-0.758286	7.477872e-21	1.295691e-16	3.926336e-18
34	7914433	8179716	NM_001264	CDSN	0.757069	9.360621e-21	1.621915e-16	4.770337e-18
35	7914433	8072931	NM_014291	GCAT	0.756154	1.107336e-20	1.918681e-16	5.481945e-18
36	7914433	8116033	NM_000505	F12	0.756149	1.108153e-20	1.920097e-16	5.333603e-18
37	7914433	8049799	NM_001001891	ANO7	0.755244	1.307470e-20	2.265453e-16	6.122847e-18
38	7914433	7974771	NM_022495	C14orf135	-0.754884	1.396326e-20	2.419415e-16	6.366881e-18
39	7914433	8018522	NM_001080542	FBF1	0.754708	1.441750e-20	2.498120e-16	6.405436e-18
40	7914433	8075016	NM_207644	C22orf36	0.754609	1.467787e-20	2.543235e-16	6.358087e-18
41	7914433	8023941	NM_130760	MADCAM1	0.754315	1.548442e-20	2.682985e-16	6.543866e-18
42	7914433	8049942	NM_080741	NEU4	0.753685	1.735766e-20	3.007561e-16	7.160859e-18
43	7914433	7923360	NM_003281	TNNI1	0.753587	1.766628e-20	3.061036e-16	7.118689e-18
44	7914433	7980219	NM_031464	RPS6KL1	0.753574	1.770857e-20	3.068363e-16	6.973553e-18
45	7914433	8093440	NM_001004356	FGFRL1	0.753550	1.778522e-20	3.081644e-16	6.848099e-18
46	7914433	7979963	NM_012074	DPF3	0.753085	1.934616e-20	3.352110e-16	7.287195e-18
47	7914433	8035539	NM_001492	GDF1	0.752999	1.964816e-20	3.404438e-16	7.243484e-18
48	7914433	7995310	ENST00000319817		0.752997	1.965629e-20	3.405846e-16	7.095512e-18
49	7914433	7992302	NM_020825	CRAMP1L	0.751976	2.361910e-20	4.092481e-16	8.352003e-18
50	7914433	8110631	NM_152547	BTNL9	0.751279	2.676311e-20	4.637244e-16	9.274487e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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