[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
9046	8178442	NM_001264	CDSN		corneodesmosin
9861	8179716	NM_001264	CDSN		corneodesmosin
10062	8124862	NM_001264	CDSN		corneodesmosin

Fetching correlation data, please wait...
Getting list of correlations for id 9046.
Getting list of p-values for id 9046.
1 of 3 done.
Getting list of correlations for id 9861.
Getting list of p-values for id 9861.
2 of 3 done.
Getting list of correlations for id 10062.
Getting list of p-values for id 10062.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.325 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178442	8124862	NM_001264	CDSN	0.985422	4.688677e-81	2.437221e-76	2.437221e-76
2	8124862	8178442	NM_001264	CDSN	0.985422	4.688677e-81	2.437221e-76	1.218611e-76
3	8124862	8179716	NM_001264	CDSN	0.978353	2.731184e-72	1.419697e-67	4.732323e-68
4	8179716	8124862	NM_001264	CDSN	0.978353	2.731184e-72	1.419697e-67	3.549242e-68
5	8178442	8179716	NM_001264	CDSN	0.960105	8.160506e-59	4.241913e-54	8.483826e-55
6	8179716	8178442	NM_001264	CDSN	0.960105	8.160506e-59	4.241913e-54	7.069855e-55
7	8179716	7987701	NM_016642	SPTBN5	0.838527	6.405888e-29	3.329844e-24	4.756921e-25
8	8179716	7937560	NM_002457	MUC2	0.832548	3.547612e-28	1.844084e-23	2.305105e-24
9	8179716	8110821	NM_001044	SLC6A3	0.824706	3.031276e-27	1.575687e-22	1.750764e-23
10	8179716	7914667	NM_052896	CSMD2	0.815472	3.320572e-26	1.726067e-21	1.726067e-22
11	8179716	8028407	NM_000540	RYR1	0.812269	7.382807e-26	3.837657e-21	3.488779e-22
12	8124862	7987701	NM_016642	SPTBN5	0.812010	7.870833e-26	4.091338e-21	3.409448e-22
13	8124862	8110821	NM_001044	SLC6A3	0.811858	8.170806e-26	4.247267e-21	3.267128e-22
14	8124862	7937560	NM_002457	MUC2	0.808706	1.764524e-25	9.172171e-21	6.551551e-22
15	8179716	8049942	NM_080741	NEU4	0.803919	5.528489e-25	2.873764e-20	1.915843e-21
16	8179716	7942717	NM_000260	MYO7A	0.802581	7.565919e-25	3.932840e-20	2.458025e-21
17	8179716	8032465	NM_144616	JSRP1	0.799278	1.624178e-24	8.442637e-20	4.966257e-21
18	8179716	7913450	NM_005529	HSPG2	0.797846	2.252406e-24	1.170823e-19	6.504575e-21
19	8179716	8114550	NM_004883	NRG2	0.796988	2.736030e-24	1.422215e-19	7.485345e-21
20	8124862	8028407	NM_000540	RYR1	0.796602	2.985053e-24	1.551660e-19	7.758301e-21
21	8179716	7929840	NM_003987	PAX2	0.796160	3.298320e-24	1.714500e-19	8.164285e-21
22	8179716	8005328	NM_016239	MYO15A	0.795716	3.644465e-24	1.894429e-19	8.611042e-21
23	8124862	8049942	NM_080741	NEU4	0.794896	4.380240e-24	2.276892e-19	9.899532e-21
24	8179716	7955184	NM_006262	PRPH	0.793740	5.666745e-24	2.945631e-19	1.227346e-20
25	8178442	7937560	NM_002457	MUC2	0.793644	5.789404e-24	3.009390e-19	1.203756e-20
26	8178442	8049942	NM_080741	NEU4	0.793503	5.973183e-24	3.104920e-19	1.194200e-20
27	8179716	8061529	NM_014012	REM1	0.792326	7.749791e-24	4.028419e-19	1.492007e-20
28	8179716	8170716	NM_005393	PLXNB3	0.791785	8.729536e-24	4.537700e-19	1.620607e-20
29	8179716	8107406	ENST00000410774		0.791738	8.821595e-24	4.585553e-19	1.581225e-20
30	8179716	8038280	NM_000737	CGB	0.791708	8.879043e-24	4.615415e-19	1.538472e-20
31	8179716	7945688	NR_003512	INS-IGF2	0.791295	9.720965e-24	5.053055e-19	1.630018e-20
32	8179716	8096556	NM_015143	METAP1	-0.791249	9.820494e-24	5.104791e-19	1.595247e-20
33	8124862	8067409	NM_005560	LAMA5	0.790545	1.145540e-23	5.954629e-19	1.804433e-20
34	8179716	8064059	NM_020882	COL20A1	0.790502	1.156404e-23	6.011103e-19	1.767971e-20
35	8178442	7987701	NM_016642	SPTBN5	0.789833	1.337723e-23	6.953619e-19	1.986748e-20
36	8179716	8115691	NM_003062	SLIT3	0.788942	1.623179e-23	8.437447e-19	2.343735e-20
37	8178442	8110821	NM_001044	SLC6A3	0.788047	1.969340e-23	1.023682e-18	2.766709e-20
38	8124862	7914667	NM_052896	CSMD2	0.787678	2.132113e-23	1.108294e-18	2.916563e-20
39	8179716	8015554	NM_012285	KCNH4	0.786085	2.997926e-23	1.558352e-18	3.995774e-20
40	8179716	7935535	NM_018058	CRTAC1	0.785613	3.314911e-23	1.723124e-18	4.307810e-20
41	8124862	7945688	NR_003512	INS-IGF2	0.785601	3.323650e-23	1.727666e-18	4.213821e-20
42	8179716	8060134	NM_004321	KIF1A	0.785508	3.389817e-23	1.762061e-18	4.195382e-20
43	8179716	8067409	NM_005560	LAMA5	0.785449	3.432850e-23	1.784430e-18	4.149836e-20
44	8178442	8028407	NM_000540	RYR1	0.784604	4.105664e-23	2.134165e-18	4.850375e-20
45	8124862	8064059	NM_020882	COL20A1	0.784572	4.133979e-23	2.148884e-18	4.775297e-20
46	8124862	7942717	NM_000260	MYO7A	0.784163	4.507078e-23	2.342824e-18	5.093096e-20
47	8179716	8138474	NM_198956	SP8	0.783631	5.041383e-23	2.620561e-18	5.575662e-20
48	8124862	8114550	NM_004883	NRG2	0.783295	5.410655e-23	2.812512e-18	5.859401e-20
49	8124862	8005328	NM_016239	MYO15A	0.783250	5.461811e-23	2.839104e-18	5.794090e-20
50	8179716	7897416	NM_001080397	SLC45A1	0.783190	5.530373e-23	2.874743e-18	5.749486e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation