[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5050	8168691	NM_006729	DIAPH2		diaphanous homolog 2 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 5050.
Getting list of p-values for id 5050.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8168691	8082688	NM_015268	DNAJC13	0.872870	7.163152e-34	1.241159e-29	1.241159e-29
2	8168691	8163275	NM_001080398	KIAA0368	0.872712	7.606566e-34	1.317990e-29	6.589948e-30
3	8168691	8146243	NM_032410	HOOK3	0.871985	1.000310e-33	1.733237e-29	5.777457e-30
4	8168691	7903519	NM_018061	PRPF38B	0.864896	1.331181e-32	2.306538e-28	5.766345e-29
5	8168691	8050658	NM_017552	ATAD2B	0.860440	6.290710e-32	1.089991e-27	2.179983e-28
6	8168691	8111360	NM_016107	ZFR	0.857595	1.649256e-31	2.857666e-27	4.762776e-28
7	8168691	8095163	NM_001024924	EXOC1	0.856218	2.609898e-31	4.522170e-27	6.460243e-28
8	8168691	7946815	NM_002645	PIK3C2A	0.855165	3.694673e-31	6.401760e-27	8.002200e-28
9	8168691	7929168	NM_025235	TNKS2	0.852906	7.721075e-31	1.337831e-26	1.486478e-27
10	8168691	7971422	NM_015070	ZC3H13	0.850649	1.592259e-30	2.758907e-26	2.758907e-27
11	8168691	7989253	NM_024755	SLTM	0.849576	2.237509e-30	3.876931e-26	3.524483e-27
12	8168691	7967304	NM_198261	RSRC2	0.849229	2.496113e-30	4.325014e-26	3.604179e-27
13	8168691	8174893	NM_001081550	THOC2	0.848538	3.101090e-30	5.373258e-26	4.133276e-27
14	8168691	8086077	NM_015097	CLASP2	0.847381	4.448588e-30	7.708068e-26	5.505763e-27
15	8168691	7984641	NM_005744	ARIH1	0.845480	7.999890e-30	1.386141e-25	9.240939e-27
16	8168691	8082607	NM_014382	ATP2C1	0.845479	8.003310e-30	1.386734e-25	8.667085e-27
17	8168691	7995583	NM_025134	CHD9	0.844354	1.128254e-29	1.954925e-25	1.149956e-26
18	8168691	8087951	NM_018165	PBRM1	0.843331	1.538347e-29	2.665493e-25	1.480830e-26
19	8168691	8147483	NM_178812	MTDH	0.841074	3.024643e-29	5.240799e-25	2.758315e-26
20	8168691	8124144	NM_003472	DEK	0.839951	4.217500e-29	7.307662e-25	3.653831e-26
21	8168691	7907790	NM_014810	CEP350	0.839480	4.844660e-29	8.394342e-25	3.997306e-26
22	8168691	8140942	NM_001040057	FAM133B	0.838646	6.187217e-29	1.072059e-24	4.872996e-26
23	8168691	8157700	NM_012197	RABGAP1	0.836717	1.083485e-28	1.877354e-24	8.162411e-26
24	8168691	7985166	NM_004136	IREB2	0.836357	1.201707e-28	2.082199e-24	8.675827e-26
25	8168691	8001211	NM_030790	ITFG1	0.836236	1.244401e-28	2.156173e-24	8.624694e-26
26	8168691	8173673	NM_000489	ATRX	0.836047	1.313987e-28	2.276746e-24	8.756715e-26
27	8168691	8134180	NM_019004	ANKIB1	0.835825	1.400114e-28	2.425978e-24	8.985102e-26
28	8168691	8152553	NM_003184	TAF2	0.833712	2.555777e-28	4.428395e-24	1.581570e-25
29	8168691	8146717	NM_013257	SGK3	0.833317	2.857162e-28	4.950605e-24	1.707105e-25
30	8168691	8100251	NM_015030	FRYL	0.833234	2.925195e-28	5.068486e-24	1.689495e-25
31	8168691	7913415	NM_032236	USP48	0.832984	3.138185e-28	5.437534e-24	1.754043e-25
32	8168691	8152782	NM_014846	KIAA0196	0.832781	3.322579e-28	5.757033e-24	1.799073e-25
33	8168691	8091562	NM_020865	DHX36	0.832066	4.060550e-28	7.035714e-24	2.132035e-25
34	8168691	7954969	NM_001114182	IRAK4	0.831917	4.232928e-28	7.334394e-24	2.157175e-25
35	8168691	8090898	NM_005862	STAG1	0.831488	4.771437e-28	8.267469e-24	2.362134e-25
36	8168691	7942839	NM_015885	PCF11	0.830859	5.684137e-28	9.848905e-24	2.735807e-25
37	8168691	8108015	NM_002154	HSPA4	0.830706	5.930196e-28	1.027525e-23	2.777095e-25
38	8168691	7932911	NM_004521	KIF5B	0.830525	6.236101e-28	1.080529e-23	2.843498e-25
39	8168691	8134122	NM_005751	AKAP9	0.830404	6.448565e-28	1.117343e-23	2.864982e-25
40	8168691	8113305	NM_001270	CHD1	0.829824	7.567558e-28	1.311231e-23	3.278077e-25
41	8168691	8006377	NM_001098507	ZNF207	0.829449	8.390016e-28	1.453738e-23	3.545703e-25
42	8168691	8107942	NM_005732	RAD50	0.829329	8.672852e-28	1.502745e-23	3.577965e-25
43	8168691	8082940	NM_015396	ARMC8	0.828883	9.801152e-28	1.698246e-23	3.949408e-25
44	8168691	8105504	NM_152789	FAM133B	0.828446	1.104573e-27	1.913893e-23	4.349756e-25
45	8168691	8046759	NM_018981	DNAJC10	0.828320	1.143428e-27	1.981217e-23	4.402705e-25
46	8168691	7929719	NM_014472	C10orf28	0.827974	1.256457e-27	2.177063e-23	4.732745e-25
47	8168691	8116664	NM_003913	PRPF4B	0.827685	1.359364e-27	2.355370e-23	5.011426e-25
48	8168691	7922912	NM_003292	TPR	0.827353	1.487390e-27	2.577201e-23	5.369169e-25
49	8168691	8078110	NM_014296	CAPN7	0.827325	1.498941e-27	2.597216e-23	5.300441e-25
50	8168691	7951038	NR_002973	SNORA40	0.827309	1.505220e-27	2.608094e-23	5.216188e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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