[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
517	8141140	NM_005221	DLX5		distal-less homeobox 5

Fetching correlation data, please wait...
Getting list of correlations for id 517.
Getting list of p-values for id 517.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8141140	8096556	NM_015143	METAP1	-0.724125	2.576033e-18	4.463492e-14	4.463492e-14
2	8141140	8109403	NR_024152	MFAP3	-0.719867	5.019857e-18	8.697906e-14	4.348953e-14
3	8141140	8079021	NM_001904	CTNNB1	-0.718000	6.699353e-18	1.160797e-13	3.869323e-14
4	8141140	8024100	NM_138690	GRIN3B	0.716419	8.539417e-18	1.479625e-13	3.699062e-14
5	8141140	8138670	NM_031243	HNRNPA2B1	-0.713919	1.249176e-17	2.164448e-13	4.328896e-14
6	8141140	8017235	NM_006380	APPBP2	-0.713903	1.252158e-17	2.169614e-13	3.616023e-14
7	8141140	8091637	NM_004733	SLC33A1	-0.711210	1.877569e-17	3.253264e-13	4.647519e-14
8	8141140	7922823	NM_025191	EDEM3	-0.707817	3.107907e-17	5.385070e-13	6.731337e-14
9	8141140	7909642	NM_024749	VASH2	0.706508	3.767535e-17	6.528008e-13	7.253343e-14
10	8141140	8099926	NM_001100399	PDS5A	-0.704937	4.740503e-17	8.213870e-13	8.213870e-14
11	8141140	8095773	NM_003715	USO1	-0.701805	7.459143e-17	1.292446e-12	1.174951e-13
12	8141140	7966389	NM_144671	FAM109A	0.698804	1.145507e-16	1.984820e-12	1.654017e-13
13	8141140	8148208	NM_144963	FAM91A1	-0.698438	1.206514e-16	2.090527e-12	1.608097e-13
14	8141140	7936826	NM_022466	IKZF5	-0.694019	2.245565e-16	3.890891e-12	2.779208e-13
15	8141140	8151842	NM_015496	KIAA1429	-0.693421	2.440287e-16	4.228285e-12	2.818857e-13
16	8141140	8042335	NM_003375	VDAC2	-0.691217	3.310431e-16	5.735983e-12	3.584990e-13
17	8141140	8022882	NM_006965	ZNF24	-0.689119	4.414076e-16	7.648269e-12	4.498982e-13
18	8141140	7931439	NM_006426	DPYSL4	0.689074	4.441121e-16	7.695131e-12	4.275073e-13
19	8141140	7989806	NM_197960	DPP8	-0.687914	5.201197e-16	9.012114e-12	4.743218e-13
20	8141140	7917156	NM_003902	FUBP1	-0.687578	5.444377e-16	9.433472e-12	4.716736e-13
21	8141140	7943552	NM_015423	AASDHPPT	-0.687305	5.649442e-16	9.788788e-12	4.661328e-13
22	8141140	8107613	NM_003100	SNX2	-0.687117	5.795437e-16	1.004175e-11	4.564433e-13
23	8141140	8044927	NM_002193	INHBB	0.687110	5.800954e-16	1.005131e-11	4.370136e-13
24	8141140	8096538	NM_001100426	RAP1GDS1	-0.686900	5.968380e-16	1.034141e-11	4.308921e-13
25	8141140	7908437	NM_024529	CDC73	-0.685765	6.956392e-16	1.205334e-11	4.821336e-13
26	8141140	8052307	NM_001122964	SMEK2	-0.685752	6.969008e-16	1.207520e-11	4.644308e-13
27	8141140	7913571	NM_001102398	HNRNPR	-0.685389	7.317653e-16	1.267930e-11	4.696036e-13
28	8141140	8097600	NM_003601	SMARCA5	-0.684666	8.064689e-16	1.397369e-11	4.990603e-13
29	8141140	7936614	NM_003750	EIF3A	-0.684509	8.236153e-16	1.427078e-11	4.920959e-13
30	8141140	8088348	NM_152678	FAM116A	-0.683835	9.014489e-16	1.561941e-11	5.206468e-13
31	8141140	8084219	NM_017644	KLHL24	-0.682576	1.066224e-15	1.847447e-11	5.959505e-13
32	8141140	8008201	NM_002507	NGFR	0.682194	1.121742e-15	1.943643e-11	6.073884e-13
33	8141140	8091648	NM_007107	SSR3	-0.682126	1.131903e-15	1.961249e-11	5.943178e-13
34	8141140	8117165	NM_003107	SOX4	0.681826	1.177980e-15	2.041085e-11	6.003192e-13
35	8141140	7913450	NM_005529	HSPG2	0.681585	1.216109e-15	2.107152e-11	6.020435e-13
36	8141140	8082788	NM_001134422	CDV3	-0.680991	1.315652e-15	2.279630e-11	6.332304e-13
37	8141140	8127787	NM_015525	IBTK	-0.680960	1.321097e-15	2.289064e-11	6.186660e-13
38	8141140	8052024	NM_025133	FBXO11	-0.680744	1.359334e-15	2.355318e-11	6.198207e-13
39	8141140	8092849	NM_024524	ATP13A3	-0.680424	1.417950e-15	2.456881e-11	6.299696e-13
40	8141140	8162833	NM_015051	ERP44	-0.679891	1.521031e-15	2.635490e-11	6.588724e-13
41	8141140	8078479	NM_013374	PDCD6IP	-0.679676	1.564720e-15	2.711191e-11	6.612661e-13
42	8141140	8046604	NM_003659	AGPS	-0.679550	1.590844e-15	2.756456e-11	6.562989e-13
43	8141140	8088485	NM_018008	FEZF2	0.679375	1.627872e-15	2.820614e-11	6.559567e-13
44	8141140	8023984	NM_001194	HCN2	0.678804	1.754611e-15	3.040215e-11	6.909580e-13
45	8141140	8152222	NM_015878	AZIN1	-0.678660	1.787878e-15	3.097855e-11	6.884123e-13
46	8141140	7933047	NM_003591	CUL2	-0.678273	1.880967e-15	3.259152e-11	7.085112e-13
47	8141140	8144121	NM_002847	PTPRN2	0.678135	1.915054e-15	3.318215e-11	7.060031e-13
48	8141140	8095148	NM_018475	TMEM165	-0.677244	2.151338e-15	3.727622e-11	7.765880e-13
49	8141140	8042161	NM_002618	PEX13	-0.676747	2.294925e-15	3.976417e-11	8.115137e-13
50	8141140	8025850	NM_020812	DOCK6	0.675257	2.784226e-15	4.824228e-11	9.648456e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation