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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6749 8134907 NM_000799 EPO link to infopage erythropoietin

Fetching correlation data, please wait...
Getting list of correlations for id 6749.
Getting list of p-values for id 6749.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8134907 8064111 NM_032957 RTEL1 link to infopage 0.796333 3.172069e-24 5.496243e-20 5.496243e-20
2 8134907 7991893 BC016613 C16orf11 link to infopage 0.795402 3.910382e-24 6.775519e-20 3.387760e-20
3 8134907 8049799 NM_001001891 ANO7 link to infopage 0.792424 7.584614e-24 1.314186e-19 4.380620e-20
4 8134907 8067409 NM_005560 LAMA5 link to infopage 0.790198 1.235509e-23 2.140767e-19 5.351918e-20
5 8134907 8025053 NM_003811 TNFSF9 link to infopage 0.787744 2.102033e-23 3.642193e-19 7.284386e-20
6 8134907 7996027 NM_002996 CX3CL1 link to infopage 0.784623 4.089878e-23 7.086532e-19 1.181089e-19
7 8134907 8159670 NM_006647 NOXA1 link to infopage 0.784454 4.238615e-23 7.344248e-19 1.049178e-19
8 8134907 7992147 NM_021098 CACNA1H link to infopage 0.783735 4.932060e-23 8.545780e-19 1.068223e-19
9 8134907 7920552 NM_002249 KCNN3 link to infopage 0.780929 8.865177e-23 1.536069e-18 1.706744e-19
10 8134907 7945688 NR_003512 INS-IGF2 link to infopage 0.779755 1.130028e-22 1.958000e-18 1.958000e-19
11 8134907 7991939 NM_145294 WDR90 link to infopage 0.776868 2.039828e-22 3.534409e-18 3.213099e-19
12 8134907 8001449 NM_024336 IRX3 link to infopage 0.776215 2.328542e-22 4.034665e-18 3.362221e-19
13 8134907 7931097 NM_002775 HTRA1 link to infopage 0.773460 4.051308e-22 7.019701e-18 5.399770e-19
14 8134907 8114550 NM_004883 NRG2 link to infopage 0.773009 4.431758e-22 7.678907e-18 5.484934e-19
15 8134907 8029950 NM_014601 EHD2 link to infopage 0.769610 8.668592e-22 1.502007e-17 1.001338e-18
16 8134907 7936882 NM_001146340 NKX1-2 link to infopage 0.768487 1.079288e-21 1.870082e-17 1.168802e-18
17 8134907 8038362 NM_178449 PTH2 link to infopage 0.767805 1.232120e-21 2.134895e-17 1.255821e-18
18 8134907 8024605 NM_021938 CELF5 link to infopage 0.767075 1.419274e-21 2.459176e-17 1.366209e-18
19 8134907 7945550 NM_018494 LRDD link to infopage 0.766386 1.620983e-21 2.808677e-17 1.478251e-18
20 8134907 8008228 NM_138281 DLX4 link to infopage 0.765987 1.750086e-21 3.032373e-17 1.516187e-18
21 8134907 7992049 NM_207112 HAGHL link to infopage 0.764489 2.331763e-21 4.040245e-17 1.923926e-18
22 8134907 7937560 NM_002457 MUC2 link to infopage 0.764445 2.351347e-21 4.074179e-17 1.851900e-18
23 8134907 8028407 NM_000540 RYR1 link to infopage 0.762697 3.276912e-21 5.677906e-17 2.468655e-18
24 8134907 8162920 NM_147180 PPP3R2 link to infopage 0.762344 3.502690e-21 6.069110e-17 2.528796e-18
25 8134907 7952243 NM_015645 C1QTNF5 link to infopage 0.761472 4.128387e-21 7.153257e-17 2.861303e-18
26 8134907 8048460 NM_003936 CDK5R2 link to infopage 0.761128 4.403619e-21 7.630150e-17 2.934673e-18
27 8134907 8115691 NM_003062 SLIT3 link to infopage 0.760377 5.068936e-21 8.782946e-17 3.252943e-18
28 8134907 8131056 NM_017781 CYP2W1 link to infopage 0.760321 5.122254e-21 8.875329e-17 3.169760e-18
29 8134907 7901187 NM_001013615 C1orf190 link to infopage 0.759587 5.873596e-21 1.017718e-16 3.509372e-18
30 8134907 8125383 NM_004557 NOTCH4 link to infopage 0.759171 6.346264e-21 1.099617e-16 3.665390e-18
31 8134907 8071745 NM_182520 C22orf15 link to infopage 0.758286 7.477554e-21 1.295636e-16 4.179470e-18
32 8134907 7897991 NM_001012277 PRAMEF7 link to infopage 0.757998 7.886984e-21 1.366578e-16 4.270555e-18
33 8134907 7912591 NM_001012277 PRAMEF7 link to infopage 0.757998 7.886984e-21 1.366578e-16 4.141144e-18
34 8134907 7912606 NM_001012277 PRAMEF7 link to infopage 0.757998 7.886984e-21 1.366578e-16 4.019346e-18
35 8134907 7911435 NM_001014980 FAM132A link to infopage 0.757426 8.764681e-21 1.518656e-16 4.339018e-18
36 8134907 8061529 NM_014012 REM1 link to infopage 0.757355 8.879736e-21 1.538592e-16 4.273866e-18
37 8134907 7927099 NR_026827 LOC84856 link to infopage 0.757157 9.209911e-21 1.595801e-16 4.312976e-18
38 8134907 7941761 NM_014578 RHOD link to infopage 0.757048 9.397521e-21 1.628308e-16 4.285022e-18
39 8134907 8001014 NM_173502 PRSS36 link to infopage 0.756455 1.047742e-20 1.815423e-16 4.654931e-18
40 8134907 7936144 NM_000494 COL17A1 link to infopage 0.756412 1.056176e-20 1.830036e-16 4.575090e-18
41 8134907 8033487 NM_032447 FBN3 link to infopage 0.756364 1.065422e-20 1.846057e-16 4.502577e-18
42 8134907 8137151 NM_198455 SSPO link to infopage 0.756058 1.126879e-20 1.952542e-16 4.648911e-18
43 8134907 8049682 hsa-mir-149 link to infopage 0.755998 1.139309e-20 1.974080e-16 4.590884e-18
44 8134907 7923360 NM_003281 TNNI1 link to infopage 0.755569 1.232255e-20 2.135129e-16 4.852565e-18
45 8134907 8019170 BC108932 C17orf55 link to infopage 0.755361 1.279929e-20 2.217734e-16 4.928297e-18
46 8134907 7906307 NM_018240 KIRREL link to infopage 0.755214 1.314631e-20 2.277861e-16 4.951872e-18
47 8134907 8153838 NM_004260 RECQL4 link to infopage 0.755101 1.342226e-20 2.325674e-16 4.948243e-18
48 8134907 8033462 NM_206833 CTXN1 link to infopage 0.754801 1.417582e-20 2.456244e-16 5.117174e-18
49 8134907 7955184 NM_006262 PRPH link to infopage 0.754122 1.603562e-20 2.778491e-16 5.670390e-18
50 8134907 8155942 NM_001013735 FOXB2 link to infopage 0.753592 1.765008e-20 3.058229e-16 6.116459e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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