[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5007	8064111	NM_032957	RTEL1		regulator of telomere elongation helicase 1

Fetching correlation data, please wait...
Getting list of correlations for id 5007.
Getting list of p-values for id 5007.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8064111	7970241	NM_000504	F10	0.826036	2.122787e-27	3.678154e-23	3.678154e-23
2	8064111	8159670	NM_006647	NOXA1	0.825960	2.167065e-27	3.754874e-23	1.877437e-23
3	8064111	8096556	NM_015143	METAP1	-0.822669	5.201257e-27	9.012218e-23	3.004073e-23
4	8064111	8024605	NM_021938	CELF5	0.821747	6.625996e-27	1.148086e-22	2.870216e-23
5	8064111	8067409	NM_005560	LAMA5	0.818466	1.550966e-26	2.687359e-22	5.374718e-23
6	8064111	8067610	NM_000744	CHRNA4	0.817960	1.765420e-26	3.058942e-22	5.098237e-23
7	8064111	7992302	NM_020825	CRAMP1L	0.811728	8.437412e-26	1.461950e-21	2.088501e-22
8	8064111	8073449	NM_014460	CSDC2	0.811576	8.759765e-26	1.517804e-21	1.897256e-22
9	8064111	7952893	BC024764	IQSEC3	0.808733	1.752669e-25	3.036850e-21	3.374278e-22
10	8064111	8093440	NM_001004356	FGFRL1	0.806000	3.378230e-25	5.853459e-21	5.853459e-22
11	8064111	8045381	NM_058241	CCNT2	-0.804488	4.834401e-25	8.376566e-21	7.615060e-22
12	8064111	8120022	NM_001253	CDC5L	-0.804176	5.204314e-25	9.017515e-21	7.514596e-22
13	8064111	7992147	NM_021098	CACNA1H	0.803296	6.399898e-25	1.108910e-20	8.530079e-22
14	8064111	8025053	NM_003811	TNFSF9	0.802330	8.022550e-25	1.390067e-20	9.929052e-22
15	8064111	8074063	NM_024866	ADM2	0.802074	8.513930e-25	1.475209e-20	9.834724e-22
16	8064111	7899284	NM_001013642	TRNP1	0.801668	9.358528e-25	1.621552e-20	1.013470e-21
17	8064111	8109179	NM_133263	PPARGC1B	0.800997	1.093299e-24	1.894359e-20	1.114329e-21
18	8064111	8093191	NM_001098424	DLG1	-0.800615	1.194342e-24	2.069437e-20	1.149687e-21
19	8064111	8031466	NM_032701	SUV420H2	0.799631	1.497828e-24	2.595286e-20	1.365940e-21
20	8064111	7897132	NM_022114	PRDM16	0.798766	1.826227e-24	3.164304e-20	1.582152e-21
21	8064111	8001449	NM_024336	IRX3	0.798559	1.914508e-24	3.317268e-20	1.579651e-21
22	8064111	7911750	NM_001010926	HES5	0.798364	2.001591e-24	3.468156e-20	1.576435e-21
23	8064111	8067602	NM_152864	NKAIN4	0.798344	2.010743e-24	3.484015e-20	1.514789e-21
24	8064111	8159036	NM_139025	ADAMTS13	0.797201	2.607197e-24	4.517491e-20	1.882288e-21
25	8064111	8075200	NM_012265	RHBDD3	0.796828	2.836620e-24	4.915011e-20	1.966005e-21
26	8064111	8134907	NM_000799	EPO	0.796333	3.172069e-24	5.496243e-20	2.113940e-21
27	8064111	7952243	NM_015645	C1QTNF5	0.796092	3.349446e-24	5.803584e-20	2.149476e-21
28	8064111	8050190	NM_003183	ADAM17	-0.795459	3.861247e-24	6.690382e-20	2.389422e-21
29	8064111	7991939	NM_145294	WDR90	0.795361	3.946790e-24	6.838604e-20	2.358139e-21
30	8064111	8131056	NM_017781	CYP2W1	0.795107	4.178355e-24	7.239837e-20	2.413279e-21
31	8064111	8105778	NM_181523	PIK3R1	-0.795015	4.264738e-24	7.389512e-20	2.383713e-21
32	8064111	8048460	NM_003936	CDK5R2	0.794925	4.351837e-24	7.540427e-20	2.356384e-21
33	8064111	8095773	NM_003715	USO1	-0.794576	4.704125e-24	8.150837e-20	2.469950e-21
34	8064111	8014269	NM_139285	GAS2L2	0.794232	5.079661e-24	8.801528e-20	2.588685e-21
35	8064111	8115941	NM_052899	GPRIN1	0.793769	5.630814e-24	9.756511e-20	2.787575e-21
36	8064111	8127787	NM_015525	IBTK	-0.793757	5.645570e-24	9.782079e-20	2.717244e-21
37	8064111	8155942	NM_001013735	FOXB2	0.793728	5.682085e-24	9.845349e-20	2.660905e-21
38	8064111	7931519	NM_152643	KNDC1	0.793231	6.344593e-24	1.099328e-19	2.892967e-21
39	8064111	8070933	NM_006657	FTCD	0.791951	8.416985e-24	1.458411e-19	3.739515e-21
40	8064111	8050176	NM_004763	ITGB1BP1	-0.791837	8.630308e-24	1.495373e-19	3.738434e-21
41	8064111	8106479	NM_004866	SCAMP1	-0.791166	1.000044e-23	1.732776e-19	4.226284e-21
42	8064111	7996468	NM_024712	ELMO3	0.790578	1.137261e-23	1.970532e-19	4.691742e-21
43	8064111	7937560	NM_002457	MUC2	0.790500	1.156770e-23	2.004336e-19	4.661246e-21
44	8064111	8024768	NM_133475	ANKRD24	0.790481	1.161646e-23	2.012784e-19	4.574508e-21
45	8064111	8017235	NM_006380	APPBP2	-0.790157	1.246568e-23	2.159929e-19	4.799841e-21
46	8064111	8006865	NM_032192	PPP1R1B	0.790155	1.247232e-23	2.161078e-19	4.697996e-21
47	8064111	7992049	NM_207112	HAGHL	0.789873	1.326264e-23	2.298018e-19	4.889401e-21
48	8064111	8087116	NM_001008269	TMEM89	0.788993	1.605395e-23	2.781668e-19	5.795143e-21
49	8064111	8049919	NM_152783	D2HGDH	0.788905	1.636332e-23	2.835272e-19	5.786269e-21
50	8064111	8166956	NM_021140	KDM6A	-0.788828	1.663482e-23	2.882315e-19	5.764631e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation