[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2595	8110265	NM_213647	FGFR4		fibroblast growth factor receptor 4

Fetching correlation data, please wait...
Getting list of correlations for id 2595.
Getting list of p-values for id 2595.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8110265	7918313	NM_001010985	MYBPHL	0.783727	4.940516e-23	8.560432e-19	8.560432e-19
2	8110265	8004842	NM_173728	ARHGEF15	0.772841	4.582279e-22	7.939715e-18	3.969857e-18
3	8110265	7911941	NM_015557	CHD5	0.754395	1.526053e-20	2.644191e-16	8.813971e-17
4	8110265	7976669	NM_001127258	HHIPL1	0.748076	4.726878e-20	8.190262e-16	2.047566e-16
5	8110265	7952893	BC024764	IQSEC3	0.744691	8.543564e-20	1.480343e-15	2.960687e-16
6	8110265	7955184	NM_006262	PRPH	0.743840	9.900276e-20	1.715421e-15	2.859035e-16
7	8110265	8036883	NM_144685	HIPK4	0.743156	1.113977e-19	1.930188e-15	2.757412e-16
8	8110265	8162283	NM_004560	ROR2	0.741904	1.381229e-19	2.393255e-15	2.991569e-16
9	8110265	7911413	NM_003327	TNFRSF4	0.741810	1.403793e-19	2.432353e-15	2.702614e-16
10	8110265	7936762	NM_001001976	ATE1	-0.741534	1.471674e-19	2.549969e-15	2.549969e-16
11	8110265	8039362	NM_178837	C19orf51	0.740665	1.706870e-19	2.957494e-15	2.688631e-16
12	8110265	7953021	NM_024551	ADIPOR2	-0.734624	4.708586e-19	8.158568e-15	6.798806e-16
13	8110265	8067610	NM_000744	CHRNA4	0.734030	5.195062e-19	9.001484e-15	6.924219e-16
14	8110265	8049942	NM_080741	NEU4	0.733258	5.900484e-19	1.022377e-14	7.302692e-16
15	8110265	8038280	NM_000737	CGB	0.730636	9.064355e-19	1.570581e-14	1.047054e-15
16	8110265	8060134	NM_004321	KIF1A	0.729969	1.010218e-18	1.750405e-14	1.094003e-15
17	8110265	8013465	NM_005557	KRT16	0.728547	1.271432e-18	2.203010e-14	1.295889e-15
18	8110265	8111216	ENST00000426411		0.728144	1.356720e-18	2.350789e-14	1.305994e-15
19	8110265	7913450	NM_005529	HSPG2	0.727898	1.411528e-18	2.445755e-14	1.287240e-15
20	8110265	8114550	NM_004883	NRG2	0.727746	1.446414e-18	2.506201e-14	1.253100e-15
21	8110265	8046922	NM_000090	COL3A1	0.727391	1.531072e-18	2.652889e-14	1.263280e-15
22	8110265	8163548	NM_138424	KIF12	0.726801	1.682935e-18	2.916022e-14	1.325465e-15
23	8110265	8038299	NM_033142	CGB7	0.725312	2.134102e-18	3.697758e-14	1.607721e-15
24	8110265	7928823	NM_001030015	OPN4	0.724643	2.373207e-18	4.112055e-14	1.713356e-15
25	8110265	7987701	NM_016642	SPTBN5	0.723697	2.756119e-18	4.775527e-14	1.910211e-15
26	8110265	7998351	NM_001025190	MSLNL	0.722793	3.178050e-18	5.506607e-14	2.117926e-15
27	8110265	8156415	NM_006648	WNK2	0.722337	3.414327e-18	5.916004e-14	2.191112e-15
28	8110265	8016382	NM_199262	SP6	0.721977	3.612307e-18	6.259045e-14	2.235373e-15
29	8110265	8072436	NM_001002837	INPP5J	0.721857	3.680647e-18	6.377458e-14	2.199123e-15
30	8110265	8030187	NM_033043	CGB5	0.721799	3.714485e-18	6.436089e-14	2.145363e-15
31	8110265	7968260	NM_145657	GSX1	0.721010	4.202036e-18	7.280869e-14	2.348667e-15
32	8110265	8041902	NM_002158	FOXN2	-0.720940	4.247830e-18	7.360215e-14	2.300067e-15
33	8110265	8159354	NM_016215	EGFL7	0.720674	4.427551e-18	7.671618e-14	2.324733e-15
34	8110265	7937560	NM_002457	MUC2	0.720538	4.522972e-18	7.836953e-14	2.304986e-15
35	8110265	8110382	NM_030567	PRR7	0.720271	4.714345e-18	8.168546e-14	2.333870e-15
36	8110265	8138474	NM_198956	SP8	0.720253	4.727650e-18	8.191600e-14	2.275444e-15
37	8110265	8007154	NM_021939	FKBP10	0.719899	4.994862e-18	8.654597e-14	2.339080e-15
38	8110265	8121209	NM_005604	POU3F2	0.719774	5.093203e-18	8.824993e-14	2.322367e-15
39	8110265	7945550	NM_018494	LRDD	0.717886	6.818387e-18	1.181422e-13	3.029287e-15
40	8110265	8012344	NM_032580	HES7	0.717875	6.830094e-18	1.183450e-13	2.958626e-15
41	8110265	7989887	NM_032445	MEGF11	0.717033	7.772761e-18	1.346786e-13	3.284845e-15
42	8110265	7931764	NM_018702	ADARB2	0.716330	8.655995e-18	1.499824e-13	3.571010e-15
43	8110265	8024712	NM_033064	ATCAY	0.716057	9.024815e-18	1.563730e-13	3.636581e-15
44	8110265	7937483	NR_002585	SNORA52	0.715907	9.234127e-18	1.599997e-13	3.636357e-15
45	8110265	7985620	NM_020778	ALPK3	0.714765	1.098749e-17	1.903802e-13	4.230672e-15
46	8110265	8003635	NM_172367	TUSC5	0.714670	1.114687e-17	1.931419e-13	4.198737e-15
47	8110265	7992845	NM_003456	ZNF205	0.714595	1.127532e-17	1.953675e-13	4.156756e-15
48	8110265	7934544	NM_144589	COMTD1	0.714546	1.135959e-17	1.968277e-13	4.100576e-15
49	8110265	8118804	NM_020804	PACSIN1	0.714252	1.187694e-17	2.057917e-13	4.199830e-15
50	8110265	7997801	NM_013278	IL17C	0.713408	1.349342e-17	2.338004e-13	4.676009e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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