[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2559	8054377	NM_201555	FHL2		four and a half LIM domains 2

Fetching correlation data, please wait...
Getting list of correlations for id 2559.
Getting list of p-values for id 2559.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8054377	7897257	NM_207396	RNF207	0.682166	1.125991e-15	1.951004e-11	1.951004e-11
2	8054377	8029671	NM_177417	KLC3	0.633171	4.245925e-13	7.356914e-9	3.678457e-9
3	8054377	8165669	AB064665		-0.631511	5.097122e-13	8.831784e-9	2.943928e-9
4	8054377	7948643	NM_013401	RAB3IL1	0.629277	6.506264e-13	1.127340e-8	2.818351e-9
5	8054377	8024003	NM_002579	PALM	0.605675	7.642178e-12	1.324160e-7	2.648320e-8
6	8054377	8169080	ENST00000243297		0.603029	9.947809e-12	1.723657e-7	2.872761e-8
7	8054377	7945539	NM_024698	SLC25A22	0.599323	1.433334e-11	2.483537e-7	3.547910e-8
8	8054377	8148888	NM_032902	PPP1R16A	0.598621	1.535207e-11	2.660053e-7	3.325066e-8
9	8054377	8024467	NM_182973	TMPRSS9	0.596028	1.975381e-11	3.422743e-7	3.803047e-8
10	8054377	8006865	NM_032192	PPP1R1B	0.593016	2.640358e-11	4.574949e-7	4.574949e-8
11	8054377	8064370	NM_004609	TCF15	0.587693	4.376590e-11	7.583317e-7	6.893924e-8
12	8054377	8176986	NM_013239	PPP2R3B	0.585684	5.284024e-11	9.155629e-7	7.629691e-8
13	8054377	8117172	NM_138574	HDGFL1	0.585363	5.444753e-11	9.434124e-7	7.257018e-8
14	8054377	8155661	NM_199135	FOXD4L3	0.584882	5.694250e-11	9.866427e-7	7.047448e-8
15	8054377	8173524	NM_001144886	CITED1	0.584572	5.861405e-11	1.015606e-6	6.770704e-8
16	8054377	7914084	NM_207397	CD164L2	0.584019	6.170740e-11	1.069204e-6	6.682526e-8
17	8054377	8012140	NM_015982	YBX2	0.583776	6.311679e-11	1.093625e-6	6.433086e-8
18	8054377	7947991	NM_015231	NUP160	-0.582735	6.950894e-11	1.204381e-6	6.691008e-8
19	8054377	8116591	NM_001453	FOXC1	0.582695	6.976218e-11	1.208769e-6	6.361944e-8
20	8054377	8110218	NM_001099408	EIF4E1B	0.582519	7.090926e-11	1.228645e-6	6.143224e-8
21	8054377	7986744	BC129821	GOLGA6L2	0.581729	7.627181e-11	1.321562e-6	6.293151e-8
22	8054377	7908637	NM_005298	GPR25	0.580897	8.234748e-11	1.426835e-6	6.485612e-8
23	8054377	8145799	NM_080872	UNC5D	0.580707	8.379457e-11	1.451909e-6	6.312646e-8
24	8054377	8036494	NM_152657	GGN	0.580056	8.895459e-11	1.541316e-6	6.422151e-8
25	8054377	8035646	NM_023002	HAPLN4	0.579819	9.091107e-11	1.575216e-6	6.300865e-8
26	8054377	8090639	NM_014602	PIK3R4	-0.579803	9.104409e-11	1.577521e-6	6.067388e-8
27	8054377	8075934	NM_014550	CARD10	0.579651	9.232245e-11	1.599671e-6	5.924708e-8
28	8054377	7980271	NM_033116	NEK9	-0.578557	1.020260e-10	1.767804e-6	6.313586e-8
29	8054377	8073705	NM_181333	PRR5	0.578427	1.032385e-10	1.788814e-6	6.168325e-8
30	8054377	8160472	NM_001004125	TUSC1	0.577220	1.152231e-10	1.996471e-6	6.654903e-8
31	8054377	8044634	NM_012184	FOXD4L1	0.577158	1.158756e-10	2.007777e-6	6.476701e-8
32	8054377	8013294	NM_001039397	TBC1D28	0.576951	1.180737e-10	2.045862e-6	6.393320e-8
33	8054377	7899957	NM_005095	ZMYM4	-0.576717	1.206056e-10	2.089733e-6	6.332525e-8
34	8054377	8025850	NM_020812	DOCK6	0.575744	1.317116e-10	2.282167e-6	6.712256e-8
35	8054377	8027770	NM_022006	FXYD7	0.575360	1.363520e-10	2.362571e-6	6.750203e-8
36	8054377	7897890	NM_015378	VPS13D	-0.575105	1.395265e-10	2.417576e-6	6.715488e-8
37	8054377	8001329	NM_004352	CBLN1	0.574831	1.430189e-10	2.478088e-6	6.697534e-8
38	8054377	8009040	NM_006039	MRC2	0.574250	1.506899e-10	2.611005e-6	6.871064e-8
39	8054377	7967789	NM_018663	PXMP2	0.574132	1.522984e-10	2.638874e-6	6.766345e-8
40	8054377	8010903	NM_006987	RPH3AL	0.573976	1.544503e-10	2.676160e-6	6.690400e-8
41	8054377	8159808	NM_207305	FOXD4	0.573954	1.547546e-10	2.681432e-6	6.540078e-8
42	8054377	8161533	NM_001085476	FOXD4L6	0.571159	1.986682e-10	3.442324e-6	8.196010e-8
43	8054377	8099924	ENST00000314232		0.569135	2.377338e-10	4.119213e-6	9.579565e-8
44	8054377	8086810	NM_003074	SMARCC1	-0.568892	2.428803e-10	4.208386e-6	9.564514e-8
45	8054377	7949444	NM_005714	KCNK7	0.568431	2.529802e-10	4.383387e-6	9.740861e-8
46	8054377	8162283	NM_004560	ROR2	0.568114	2.601333e-10	4.507329e-6	9.798542e-8
47	8054377	8148799	NM_016458	C8orf30A	0.568046	2.617055e-10	4.534572e-6	9.648025e-8
48	8054377	8174005	NM_024917	TRMT2B	-0.567944	2.640574e-10	4.575323e-6	9.531924e-8
49	8054377	8093792	NM_001528	HGFAC	0.567009	2.866746e-10	4.967210e-6	1.013716e-7
50	8054377	8045398	NM_012233	RAB3GAP1	-0.566104	3.103167e-10	5.376857e-6	1.075371e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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