[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 3280.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3280	8176986	NM_013239	PPP2R3B		protein phosphatase 2, regulatory subunit B'', beta

Fetching correlation data, please wait...
Getting list of correlations for id 3280.
Getting list of p-values for id 3280.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8176986	8171087	NM_013239	PPP2R3B	0.981172	2.220035e-75	3.846655e-71	3.846655e-71
2	8176986	8070933	NM_006657	FTCD	0.780685	9.324353e-23	1.615631e-18	8.078153e-19
3	8176986	8007259	ENST00000225928		0.780360	9.972801e-23	1.727987e-18	5.759958e-19
4	8176986	8117172	NM_138574	HDGFL1	0.775084	2.925684e-22	5.069333e-18	1.267333e-18
5	8176986	7974047	NM_001049	SSTR1	0.771719	5.724819e-22	9.919394e-18	1.983879e-18
6	8176986	7945536	NM_016564	CEND1	0.770678	7.029767e-22	1.218048e-17	2.030080e-18
7	8176986	8038362	NM_178449	PTH2	0.769008	9.751715e-22	1.689680e-17	2.413828e-18
8	8176986	7947991	NM_015231	NUP160	-0.768240	1.132340e-21	1.962005e-17	2.452506e-18
9	8176986	8062948	NM_014276	RBPJL	0.767535	1.298273e-21	2.249518e-17	2.499465e-18
10	8176986	8076747	AK123383	LOC642648	0.766454	1.599859e-21	2.772075e-17	2.772075e-18
11	8176986	8016320	NM_203400	RPRML	0.765942	1.765424e-21	3.058950e-17	2.780863e-18
12	8176986	8136080	NM_005631	SMO	0.764107	2.507663e-21	4.345027e-17	3.620856e-18
13	8176986	8016077	NM_001002909	GPATCH8	-0.763976	2.571100e-21	4.454945e-17	3.426881e-18
14	8176986	7952752	NM_007037	ADAMTS8	0.762560	3.363105e-21	5.827252e-17	4.162323e-18
15	8176986	7903369	NM_133496	SLC30A7	-0.762060	3.695387e-21	6.402997e-17	4.268665e-18
16	8176986	8165538	NM_001033113	ENTPD8	0.761644	3.996650e-21	6.924996e-17	4.328123e-18
17	8176986	8033433	NM_198492	CLEC4G	0.760976	4.530470e-21	7.849945e-17	4.617615e-18
18	8176986	8061303	NM_002196	INSM1	0.757815	8.158167e-21	1.413566e-16	7.853143e-18
19	8176986	8035249	NM_005234	NR2F6	0.757420	8.773898e-21	1.520253e-16	8.001333e-18
20	8176986	8098512	NM_021942	C4orf41	-0.757366	8.861937e-21	1.535508e-16	7.677539e-18
21	8176986	8131195	NM_133463	AMZ1	0.755770	1.187817e-20	2.058130e-16	9.800620e-18
22	8176986	7935528	NM_003015	SFRP5	0.755351	1.282410e-20	2.222033e-16	1.010015e-17
23	8176986	8153409	NM_201589	MAFA	0.754928	1.385194e-20	2.400126e-16	1.043533e-17
24	8176986	8107992	NM_175873	ANKRD43	0.753769	1.709419e-20	2.961911e-16	1.234129e-17
25	8176986	7961767	AK295862	KIAA0528	-0.753293	1.863347e-20	3.228622e-16	1.291449e-17
26	8176986	7942715	NM_006189	OMP	0.753239	1.881389e-20	3.259882e-16	1.253801e-17
27	8176986	7992197	ENST00000429194		0.752361	2.204078e-20	3.819006e-16	1.414447e-17
28	8176986	8125383	NM_004557	NOTCH4	0.752303	2.227139e-20	3.858964e-16	1.378202e-17
29	8176986	8110522	NM_001746	CANX	-0.752030	2.338950e-20	4.052698e-16	1.397482e-17
30	8176986	7939434	NM_018259	TTC17	-0.751872	2.406582e-20	4.169884e-16	1.389961e-17
31	8176986	7974771	NM_022495	C14orf135	-0.751739	2.464594e-20	4.270402e-16	1.377549e-17
32	8176986	8172119	NM_004229	MED14	-0.751605	2.524530e-20	4.374253e-16	1.366954e-17
33	8176986	8110237	NM_133369	UNC5A	0.751034	2.795983e-20	4.844599e-16	1.468060e-17
34	8176986	8033825	NM_015719	COL5A3	0.750942	2.842625e-20	4.925417e-16	1.448652e-17
35	8176986	8107066	NM_005575	LNPEP	-0.750940	2.843221e-20	4.926449e-16	1.407557e-17
36	8176986	7935834	NM_024895	PDZD7	0.750019	3.351065e-20	5.806390e-16	1.612886e-17
37	8176986	8006865	NM_032192	PPP1R1B	0.749517	3.663281e-20	6.347367e-16	1.715505e-17
38	8176986	8067011	NM_015339	ADNP	-0.748558	4.341346e-20	7.522251e-16	1.979540e-17
39	8176986	8098740	NM_033178	DUX4	0.748522	4.369190e-20	7.570496e-16	1.941153e-17
40	8176986	7986822	NM_000814	GABRB3	0.747912	4.865157e-20	8.429858e-16	2.107464e-17
41	8176986	7917156	NM_003902	FUBP1	-0.747355	5.366044e-20	9.297744e-16	2.267742e-17
42	8176986	8098732	NM_033178	DUX4	0.746138	6.641646e-20	1.150798e-15	2.739995e-17
43	8176986	8128650	NM_007214	SEC63	-0.746101	6.684129e-20	1.158159e-15	2.693393e-17
44	8176986	8044263	NM_006267	RANBP2	-0.745383	7.575495e-20	1.312606e-15	2.983195e-17
45	8176986	8086810	NM_003074	SMARCC1	-0.745298	7.688877e-20	1.332252e-15	2.960560e-17
46	8176986	8062880	NM_003404	YWHAB	-0.745288	7.701193e-20	1.334386e-15	2.900838e-17
47	8176986	8083282	NM_032383	HPS3	-0.745004	8.092156e-20	1.402128e-15	2.983251e-17
48	8176986	8061647	NM_001011718	XKR7	0.744972	8.136779e-20	1.409860e-15	2.937208e-17
49	8176986	7949015	NM_001144936	C11orf95	0.744956	8.159557e-20	1.413806e-15	2.885319e-17
50	8176986	7989806	NM_197960	DPP8	-0.744524	8.794435e-20	1.523812e-15	3.047624e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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