[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5597	7935834	NM_024895	PDZD7		PDZ domain containing 7

Fetching correlation data, please wait...
Getting list of correlations for id 5597.
Getting list of p-values for id 5597.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7935834	8009382	NM_004459	BPTF	-0.811538	8.840743e-26	1.531836e-21	1.531836e-21
2	7935834	8098512	NM_021942	C4orf41	-0.811124	9.787820e-26	1.695936e-21	8.479678e-22
3	7935834	7935983	NM_005029	PITX3	0.804896	4.390863e-25	7.608048e-21	2.536016e-21
4	7935834	8131056	NM_017781	CYP2W1	0.803130	6.653596e-25	1.152869e-20	2.882171e-21
5	7935834	8067011	NM_015339	ADNP	-0.800664	1.180825e-24	2.046015e-20	4.092030e-21
6	7935834	8096556	NM_015143	METAP1	-0.800495	1.227807e-24	2.127421e-20	3.545701e-21
7	7935834	7927367	NM_001040084	ANXA8	0.798308	2.027432e-24	3.512932e-20	5.018474e-21
8	7935834	8038150	NM_182574	MAMSTR	0.794078	5.256878e-24	9.108593e-20	1.138574e-20
9	7935834	7974771	NM_022495	C14orf135	-0.793869	5.507218e-24	9.542357e-20	1.060262e-20
10	7935834	7927307	NM_001630	ANXA8L2	0.792706	7.127079e-24	1.234909e-19	1.234909e-20
11	7935834	8141648	NM_015831	ACHE	0.790761	1.092784e-23	1.893468e-19	1.721334e-20
12	7935834	8017776	NM_014877	HELZ	-0.789753	1.361317e-23	2.358754e-19	1.965629e-20
13	7935834	7981217	NM_018036	ATG2B	-0.787887	2.038095e-23	3.531407e-19	2.716467e-20
14	7935834	8079021	NM_001904	CTNNB1	-0.787235	2.344848e-23	4.062918e-19	2.902085e-20
15	7935834	7937612	NM_002458	MUC5B	0.786233	2.905306e-23	5.034024e-19	3.356016e-20
16	7935834	8083282	NM_032383	HPS3	-0.783188	5.533701e-23	9.588244e-19	5.992652e-20
17	7935834	7945688	NR_003512	INS-IGF2	0.782655	6.187075e-23	1.072034e-18	6.306085e-20
18	7935834	8028407	NM_000540	RYR1	0.782438	6.474835e-23	1.121895e-18	6.232748e-20
19	7935834	8125568	NM_080680	COL11A2	0.781291	8.223855e-23	1.424947e-18	7.499723e-20
20	7935834	7905490	NM_178434	LCE3C	0.780996	8.743129e-23	1.514922e-18	7.574610e-20
21	7935834	8100902	NM_032217	ANKRD17	-0.780680	9.334592e-23	1.617405e-18	7.701928e-20
22	7935834	8115691	NM_003062	SLIT3	0.779717	1.138992e-22	1.973532e-18	8.970599e-20
23	7935834	8118804	NM_020804	PACSIN1	0.779052	1.306005e-22	2.262915e-18	9.838760e-20
24	7935834	7955112	NM_181788	H1FNT	0.778016	1.614711e-22	2.797811e-18	1.165754e-19
25	7935834	8070482	NR_027272	C21orf129	0.777239	1.891731e-22	3.277802e-18	1.311121e-19
26	7935834	8008201	NM_002507	NGFR	0.776938	2.011004e-22	3.484466e-18	1.340179e-19
27	7935834	7999562	NM_002582	PARN	-0.776551	2.175427e-22	3.769363e-18	1.396060e-19
28	7935834	7977418	NM_001134875	C14orf80	0.776425	2.231658e-22	3.866794e-18	1.380998e-19
29	7935834	7907549	NM_022093	TNN	0.775650	2.610325e-22	4.522910e-18	1.559624e-19
30	7935834	7949015	NM_001144936	C11orf95	0.774570	3.243804e-22	5.620540e-18	1.873513e-19
31	7935834	7911435	NM_001014980	FAM132A	0.774446	3.325501e-22	5.762096e-18	1.858741e-19
32	7935834	7983663	NM_005154	USP8	-0.773383	4.113301e-22	7.127116e-18	2.227224e-19
33	7935834	8151609	NM_172239	REXO1L1	0.773363	4.129930e-22	7.155929e-18	2.168463e-19
34	7935834	7977693	NM_020920	CHD8	-0.772222	5.182564e-22	8.979828e-18	2.641126e-19
35	7935834	8036699	NM_001080468	SYCN	0.772036	5.376684e-22	9.316181e-18	2.661766e-19
36	7935834	7976669	NM_001127258	HHIPL1	0.772022	5.391477e-22	9.341813e-18	2.594948e-19
37	7935834	8161192	NM_194328	RNF38	-0.771539	5.932158e-22	1.027865e-17	2.778014e-19
38	7935834	7946661	NM_015881	DKK3	0.771322	6.192537e-22	1.072981e-17	2.823634e-19
39	7935834	7945162	NM_003658	BARX2	0.771138	6.421172e-22	1.112596e-17	2.852811e-19
40	7935834	7991939	NM_145294	WDR90	0.771112	6.453590e-22	1.118213e-17	2.795534e-19
41	7935834	8006562	NM_033315	RASL10B	0.770955	6.657238e-22	1.153500e-17	2.813414e-19
42	7935834	8100714	NM_001031732	YTHDC1	-0.770345	7.505966e-22	1.300559e-17	3.096568e-19
43	7935834	8120022	NM_001253	CDC5L	-0.770029	7.985308e-22	1.383614e-17	3.217708e-19
44	7935834	8014269	NM_139285	GAS2L2	0.769745	8.443237e-22	1.462960e-17	3.324908e-19
45	7935834	8083523	NM_003875	GMPS	-0.769098	9.581380e-22	1.660166e-17	3.689257e-19
46	7935834	7950005	NM_001098515	MRGPRF	0.768901	9.956108e-22	1.725095e-17	3.750206e-19
47	7935834	7991893	BC016613	C16orf11	0.768505	1.075519e-21	1.863551e-17	3.965003e-19
48	7935834	8125383	NM_004557	NOTCH4	0.768174	1.147074e-21	1.987536e-17	4.140699e-19
49	7935834	8159670	NM_006647	NOXA1	0.768096	1.164422e-21	2.017594e-17	4.117538e-19
50	7935834	8153876	NM_025251	ARHGAP39	0.768030	1.179642e-21	2.043966e-17	4.087932e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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