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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
6282 8098714 NM_004477 FRG1 link to infopage FSHD region gene 1
16185 8161509 NM_004477 FRG1 link to infopage FSHD region gene 1

Fetching correlation data, please wait...
Getting list of correlations for id 6282.
Getting list of p-values for id 6282.
1 of 2 done.
Getting list of correlations for id 16185.
Getting list of p-values for id 16185.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.220 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8161509 7958130 NM_003299 HSP90B1 link to infopage 0.756329 1.072334e-20 3.716067e-16 3.716067e-16
2 8161509 8070341 NM_033656 BRWD1 link to infopage 0.749350 3.773221e-20 1.307572e-15 6.537861e-16
3 8161509 8085815 NM_001068 TOP2B link to infopage 0.746841 5.872767e-20 2.035149e-15 6.783829e-16
4 8161509 8127787 NM_015525 IBTK link to infopage 0.740118 1.873113e-19 6.491085e-15 1.622771e-15
5 8161509 7946703 NM_016451 COPB1 link to infopage 0.735363 4.165396e-19 1.443476e-14 2.886953e-15
6 8161509 7976243 NM_017437 CPSF2 link to infopage 0.734724 4.630966e-19 1.604815e-14 2.674691e-15
7 8161509 8151149 NM_006421 ARFGEF1 link to infopage 0.734638 4.697621e-19 1.627914e-14 2.325591e-15
8 8161509 8099926 NM_001100399 PDS5A link to infopage 0.733691 5.493602e-19 1.903753e-14 2.379691e-15
9 8161509 8084971 NM_152699 SENP5 link to infopage 0.732046 7.200474e-19 2.495252e-14 2.772502e-15
10 8161509 8105353 NM_015360 SKIV2L2 link to infopage 0.731922 7.348077e-19 2.546403e-14 2.546403e-15
11 8161509 8104944 NM_015384 NIPBL link to infopage 0.729644 1.064730e-18 3.689716e-14 3.354287e-15
12 8161509 8095773 NM_003715 USO1 link to infopage 0.728997 1.182324e-18 4.097225e-14 3.414355e-15
13 8161509 8078187 NM_015184 PLCL2 link to infopage 0.728892 1.202463e-18 4.167015e-14 3.205396e-15
14 8161509 8106784 NM_002890 RASA1 link to infopage 0.728486 1.283928e-18 4.449323e-14 3.178088e-15
15 8161509 7979367 NM_006544 EXOC5 link to infopage 0.728192 1.346255e-18 4.665311e-14 3.110207e-15
16 8161509 7916185 NM_001009881 ZCCHC11 link to infopage 0.728088 1.368988e-18 4.744092e-14 2.965057e-15
17 8161509 8094876 NM_021927 GUF1 link to infopage 0.727230 1.571345e-18 5.445340e-14 3.203141e-15
18 8161509 7908437 NM_024529 CDC73 link to infopage 0.726815 1.679304e-18 5.819459e-14 3.233033e-15
19 8161509 8144812 NM_006197 PCM1 link to infopage 0.726768 1.691929e-18 5.863211e-14 3.085900e-15
20 8161509 7930380 NM_016824 ADD3 link to infopage 0.725875 1.951292e-18 6.762006e-14 3.381003e-15
21 8161509 8047339 NR_026584 BZW1L1 link to infopage 0.725568 2.049129e-18 7.101053e-14 3.381454e-15
22 8161509 8044263 NM_006267 RANBP2 link to infopage 0.725074 2.216299e-18 7.680362e-14 3.491073e-15
23 8161509 8058052 NM_002156 HSPD1 link to infopage 0.724524 2.418382e-18 8.380660e-14 3.643765e-15
24 8161509 8042601 NM_014497 ZNF638 link to infopage 0.724279 2.513882e-18 8.711607e-14 3.629836e-15
25 8161509 8129045 NM_001527 HDAC2 link to infopage 0.723374 2.900237e-18 1.005048e-13 4.020192e-15
26 8161509 8100615 NM_018227 UBA6 link to infopage 0.723190 2.985499e-18 1.034595e-13 3.979211e-15
27 8161509 8132292 NM_001788 SEPT7 link to infopage 0.722878 3.136106e-18 1.086786e-13 4.025134e-15
28 8161509 8104838 NM_194283 DNAJC21 link to infopage 0.722637 3.256911e-18 1.128650e-13 4.030893e-15
29 8161509 7910520 NM_014236 GNPAT link to infopage 0.721027 4.190921e-18 1.452322e-13 5.008006e-15
30 8161509 8078110 NM_014296 CAPN7 link to infopage 0.720893 4.279269e-18 1.482938e-13 4.943126e-15
31 8161509 8085081 NM_016302 CRBN link to infopage 0.720418 4.607636e-18 1.596730e-13 5.150742e-15
32 8161509 8056909 NM_001880 ATF2 link to infopage 0.720007 4.912234e-18 1.702286e-13 5.319643e-15
33 8161509 8131519 NM_014660 PHF14 link to infopage 0.719271 5.506004e-18 1.908051e-13 5.781972e-15
34 8161509 7988713 NM_017672 TRPM7 link to infopage 0.718688 6.025369e-18 2.088031e-13 6.141268e-15
35 8161509 7974146 NM_017922 PRPF39 link to infopage 0.718466 6.235738e-18 2.160933e-13 6.174094e-15
36 8161509 8054135 NM_012214 MGAT4A link to infopage 0.717994 6.705943e-18 2.323877e-13 6.455215e-15
37 8161509 8120992 NM_015021 ZNF292 link to infopage 0.717520 7.213741e-18 2.499850e-13 6.756350e-15
38 8161509 8083094 NM_006506 RASA2 link to infopage 0.717260 7.506821e-18 2.601414e-13 6.845826e-15
39 8161509 8097600 NM_003601 SMARCA5 link to infopage 0.717169 7.612502e-18 2.638037e-13 6.764196e-15
40 8161509 8045697 NM_018151 RIF1 link to infopage 0.716957 7.864434e-18 2.725341e-13 6.813352e-15
41 8161509 7968333 NM_005800 USPL1 link to infopage 0.716807 8.047363e-18 2.788733e-13 6.801789e-15
42 8161509 8078360 NM_178862 STT3B link to infopage 0.716634 8.262887e-18 2.863421e-13 6.817668e-15
43 8161509 8133809 NM_198467 RSBN1L link to infopage 0.716546 8.375054e-18 2.902291e-13 6.749515e-15
44 8161509 8028186 NM_007145 ZNF146 link to infopage 0.715591 9.690362e-18 3.358098e-13 7.632041e-15
45 8161509 7938313 NM_006391 IPO7 link to infopage 0.715506 9.816901e-18 3.401949e-13 7.559886e-15
46 8161509 8083183 NM_001080415 SR140 link to infopage 0.714848 1.084942e-17 3.759758e-13 8.173387e-15
47 8161509 8177560 NM_018429 BDP1 link to infopage 0.714684 1.112321e-17 3.854637e-13 8.201356e-15
48 8161509 8045563 NM_018460 ARHGAP15 link to infopage 0.714607 1.125479e-17 3.900234e-13 8.125488e-15
49 8161509 7989387 NM_020821 VPS13C link to infopage 0.714500 1.143891e-17 3.964039e-13 8.089875e-15
50 8161509 8105778 NM_181523 PIK3R1 link to infopage 0.714314 1.176594e-17 4.077369e-13 8.154738e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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