Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
10298	8106025	NM_018429	BDP1		B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
10459	8177560	NM_018429	BDP1		B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8106025	8177560	NM_018429	BDP1		0.998728	1.870141e-135	6.480785e-131	6.480785e-131
2	8177560	8106025	NM_018429	BDP1		0.998728	1.870141e-135	6.480785e-131	3.240393e-131
3	8177560	8130038	NM_001042683	SHPRH		0.933918	8.116166e-48	2.812576e-43	9.375254e-44
4	8106025	8130038	NM_001042683	SHPRH		0.931643	4.376069e-47	1.516483e-42	3.791207e-43
5	8106025	7969881	NM_003291	TPP2		0.922482	2.249079e-44	7.793957e-40	1.558791e-40
6	8177560	7969881	NM_003291	TPP2		0.921958	3.138346e-44	1.087563e-39	1.812604e-40
7	8177560	8144812	NM_006197	PCM1		0.918552	2.594836e-43	8.992144e-39	1.284592e-39
8	8106025	8144812	NM_006197	PCM1		0.916604	8.333241e-43	2.887801e-38	3.609752e-39
9	8106025	8174893	NM_001081550	THOC2		0.916178	1.071762e-42	3.714082e-38	4.126758e-39
10	8177560	7953878	NM_001004419	CLEC2D		0.915338	1.752194e-42	6.072052e-38	6.072052e-39
11	8177560	8174893	NM_001081550	THOC2		0.915221	1.876104e-42	6.501451e-38	5.910410e-39
12	8177560	7943620	NM_000051	ATM		0.915198	1.901060e-42	6.587933e-38	5.489944e-39
13	8106025	7943620	NM_000051	ATM		0.914772	2.433947e-42	8.434601e-38	6.488154e-39
14	8106025	7953878	NM_001004419	CLEC2D		0.913981	3.838463e-42	1.330181e-37	9.501293e-39
15	8106025	8091190	NM_001184	ATR		0.912876	7.199459e-42	2.494900e-37	1.663267e-38
16	8177560	8091190	NM_001184	ATR		0.912843	7.335035e-42	2.541883e-37	1.588677e-38
17	8177560	8070341	NM_033656	BRWD1		0.912528	8.760263e-42	3.035782e-37	1.785754e-38
18	8106025	8070341	NM_033656	BRWD1		0.910821	2.266852e-41	7.855548e-37	4.364194e-38
19	8177560	8129193	NM_001042475	C6orf204		0.909439	4.829664e-41	1.673672e-36	8.808798e-38
20	8106025	8129193	NM_001042475	C6orf204		0.908286	8.992108e-41	3.116125e-36	1.558063e-37
21	8106025	8156718	NM_002486	NCBP1		0.908232	9.259969e-41	3.208950e-36	1.528071e-37
22	8106025	8027416	NM_003796	C19orf2		0.906708	2.078552e-40	7.203015e-36	3.274098e-37
23	8177560	8156718	NM_002486	NCBP1		0.906224	2.679022e-40	9.283884e-36	4.036471e-37
24	8177560	8027416	NM_003796	C19orf2		0.904165	7.771792e-40	2.693237e-35	1.122182e-36
25	8106025	8046759	NM_018981	DNAJC10		0.903739	9.659797e-40	3.347506e-35	1.339002e-36
26	8106025	8113157	NM_014639	TTC37		0.902892	1.484065e-39	5.142878e-35	1.978030e-36
27	8177560	8116664	NM_003913	PRPF4B		0.902890	1.485365e-39	5.147383e-35	1.906438e-36
28	8177560	8043697	NM_025190	ANKRD36B		0.902808	1.548000e-39	5.364438e-35	1.915871e-36
29	8177560	8113157	NM_014639	TTC37		0.902604	1.715112e-39	5.943550e-35	2.049500e-36
30	8106025	8116664	NM_003913	PRPF4B		0.902340	1.958081e-39	6.785534e-35	2.261845e-36
31	8106025	8140878	NM_194455	KRIT1		0.902307	1.991371e-39	6.900897e-35	2.226096e-36
32	8106025	8043697	NM_025190	ANKRD36B		0.902164	2.138677e-39	7.411371e-35	2.316053e-36
33	8177560	8078110	NM_014296	CAPN7		0.902080	2.230484e-39	7.729520e-35	2.342279e-36
34	8177560	8140878	NM_194455	KRIT1		0.901903	2.436582e-39	8.443731e-35	2.483450e-36
35	8106025	8078110	NM_014296	CAPN7		0.901880	2.464756e-39	8.541365e-35	2.440390e-36
36	8177560	8046759	NM_018981	DNAJC10		0.901710	2.683401e-39	9.299059e-35	2.583072e-36
37	8177560	7930380	NM_016824	ADD3		0.901349	3.210417e-39	1.112538e-34	3.006860e-36
38	8106025	8128472	NM_006828	ASCC3		0.900482	4.925616e-39	1.706923e-34	4.491902e-36
39	8177560	7967386	NM_022782	MPHOSPH9		0.900206	5.641084e-39	1.954861e-34	5.012465e-36
40	8106025	7930380	NM_016824	ADD3		0.899948	6.398855e-39	2.217459e-34	5.543648e-36
41	8106025	8107942	NM_005732	RAD50		0.899563	7.721722e-39	2.675886e-34	6.526550e-36
42	8177560	8052845	NM_022173	TIA1		0.899496	7.974986e-39	2.763652e-34	6.580123e-36
43	8106025	7967386	NM_022782	MPHOSPH9		0.899384	8.424168e-39	2.919311e-34	6.789096e-36
44	8177560	8047097	NM_014905	GLS		0.899001	1.014236e-38	3.514735e-34	7.988034e-36
45	8177560	7969114	NM_031915	SETDB2		0.898177	1.508328e-38	5.226961e-34	1.161547e-35
46	8177560	8155946	NM_033305	VPS13A		0.898091	1.572231e-38	5.448409e-34	1.184437e-35
47	8177560	8173673	NM_000489	ATRX		0.898032	1.616846e-38	5.603017e-34	1.192131e-35
48	8106025	8173673	NM_000489	ATRX		0.897451	2.134312e-38	7.396245e-34	1.540884e-35
49	8177560	7987981	NM_174916	UBR1		0.897373	2.214707e-38	7.674847e-34	1.566295e-35
50	8106025	7969114	NM_031915	SETDB2		0.897358	2.230350e-38	7.729056e-34	1.545811e-35

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.